rs262891633 SNP Detail

Summary

• ID
  rs262891633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85428292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGTGGGC CGCGACGCAC
  GTGGGCAGCC AGAGCACGAG ACAGCACCAG CCCGCGGCGC CACGGCTCAT CTCCAGGGCC
  CGTCCCGCCG CCGCCGCCGC CGCCGTCCCG CCGCGATCCC TCGCCCGACT TTAGCCTGAC
  AGCTGCCACG GCCTCCCTCA GGCCCGCTCT CCGCGCCGGT TGGAGCACAG AACGGAGGCC
  R
  GCGGCTGATT GGCCGCCACG CCTGTTCGTG TGGCCGCACT TTCCTCCTCT GCGCCCTAGG
  CCACTTCCTA TTGGCCAGGA GAAGTGGAAC CGGGCGCTGA TTGGCCAAAA CTCTTAATAG
  CAACTGCAGT TCGCGGCCCC GCCCCCGCAC TCCTCCTTAT AGACGCGCCT CCCGGAACCT
  GCGGTGGGCG GCTCGCGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369068644	MGP_WTSI_6_85401304	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262891633					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369068644	MGP_WTSI_6_85401304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85428292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cct7	chaperonin containing TCP1 subunit 7			204 bp upstream
Cpgi17646	CpG island 17646			within coordinates
Pradc1	protease-associated domain containing 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr633222	regulatory region 633222			1143 bp distal
Rr633223	regulatory region 633223			73 bp distal
Rr633224	regulatory region 633224			within coordinates
Rr633225	regulatory region 633225			215 bp proximal
Rr633226	regulatory region 633226			650 bp proximal
Rr633227	regulatory region 633227			793 bp proximal
Tssr57418	transcription start site region 57418			178 bp upstream
Tssr57419	transcription start site region 57419			673 bp upstream
Tssr57420	transcription start site region 57420			695 bp upstream
Tssr57421	transcription start site region 57421			731 bp upstream
Tssr61752	transcription start site region 61752			within coordinates
Tssr61753	transcription start site region 61753			519 bp downstream
Tssr61754	transcription start site region 61754			553 bp downstream
Tssr61755	transcription start site region 61755			645 bp downstream