rs262893136 SNP Detail

Summary

• ID
  rs262893136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69814567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTACGTG GGGGAGGTTA
  TATGCCACTT GAGGTTCCAG AAGGCTTCTG TGTTGGTTGT GGTGTAAAAC AGAGGGAAAT
  GAGCCCAGGC TGAGTAGCCC AGCTCACCAC AGTGTCTCTG CTGTACCATA CAGCAGGAGC
  AACCACACTA GCAAGGTCTC ATTGAGCACT ACTTGCAAGC TGCCAAAGGA GCAAAGAGCA
  R
  CACAGGAAAC GCTCTCTTGT TGCAATGCAT AATTCCTCTG TGTTGATGAC TTTCTGGAGG
  GTGGTGCCTA CCTTCTGGAA CATGAAAAGC ATGCTTCATG GACATTAACA AGCCACAAGC
  CACTGTAATC TCATTTACAG GAGGTCATGG CGGATCTTAG GTAACCAATA TCACAGGGCA
  GAACAAGCTC TTGGGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085521	CHEV_12_70868780	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262893136					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69814567 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467131	regulatory region 467131	1833 bp distal
Rr467132	regulatory region 467132	1124 bp distal
Rr467133	regulatory region 467133	2 bp distal
Tssr116524	transcription start site region 116524	501 bp upstream
Tssr116525	transcription start site region 116525	1510 bp downstream
Tssr116526	transcription start site region 116526	1940 bp downstream