rs262899440 SNP Detail

Summary

• ID
  rs262899440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142206904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCATA TGTGTTATGT
  GTATGTGTGT GTTAATGCCT GTGGGTGTGA GTATAATCAT GTGCTTTTTA GGGTAGGTAG
  GGAAAAGTGA GATTTTGGGA CTGGGGGCTT GTGCCAATTA AGTTCTATTT CCAGTTTTCA
  TGTTCTGTTC TTCTCCTTGG GTTCTTTCAC CCAGCCCCCT TGGTGACATG GGGGACATTT
  R
  TGATGGAATG ACCAGTGAAG AAAGAGTTTG GGCGGCTATT GTTGTTCTCA GCCAGCTTTA
  CACTAAAGGT GCTTGGGATA AGGAGAGGGC ACTGAAGCAA TGACATGCCA CCTGCAAAAT
  TTTGGGTCCC CTTCCTTTCT TCTTGGGTTC TGGGATCCAA GTCTTAGCCA ATTTGACTAA
  AGATCCAAAT GGAAAGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454556	MGP_WTSI_7_149839072	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262899440					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454556	MGP_WTSI_7_149839072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142206904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	1118 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	72 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1757 bp downstream
Rr167001	regulatory region 167001	496 bp proximal
Tssr2462	transcription start site region 2462	110 bp downstream
Tssr2463	transcription start site region 2463	677 bp downstream
Tssr70229	transcription start site region 70229	150 bp downstream
Tssr70230	transcription start site region 70230	57 bp downstream
Tssr70231	transcription start site region 70231	386 bp upstream
Tssr70232	transcription start site region 70232	422 bp upstream
Tssr70233	transcription start site region 70233	472 bp upstream
Tssr70234	transcription start site region 70234	498 bp upstream
Tssr70235	transcription start site region 70235	534 bp upstream
Tssr70236	transcription start site region 70236	566 bp upstream
Tssr70237	transcription start site region 70237	662 bp upstream
Tssr70238	transcription start site region 70238	681 bp upstream
Tssr70239	transcription start site region 70239	825 bp upstream
Tssr70240	transcription start site region 70240	1146 bp upstream
Tssr75849	transcription start site region 75849	1822 bp upstream
Tssr75850	transcription start site region 75850	1776 bp upstream
Tssr75851	transcription start site region 75851	1763 bp upstream
Tssr75852	transcription start site region 75852	1573 bp upstream
Tssr75853	transcription start site region 75853	1532 bp upstream
Tssr75854	transcription start site region 75854	1125 bp upstream
Tssr75855	transcription start site region 75855	941 bp upstream
Tssr75856	transcription start site region 75856	902 bp upstream
Tssr75857	transcription start site region 75857	887 bp upstream
Tssr75858	transcription start site region 75858	849 bp upstream
Tssr75859	transcription start site region 75859	793 bp upstream
Tssr75860	transcription start site region 75860	738 bp upstream
Tssr75861	transcription start site region 75861	706 bp upstream
Tssr75862	transcription start site region 75862	159 bp upstream
Tssr75863	transcription start site region 75863	128 bp upstream
Tssr75864	transcription start site region 75864	99 bp upstream
Tssr75865	transcription start site region 75865	66 bp upstream
Tssr75866	transcription start site region 75866	19 bp upstream
Tssr75867	transcription start site region 75867	3 bp downstream
Tssr75868	transcription start site region 75868	26 bp downstream
Tssr75869	transcription start site region 75869	36 bp downstream
Tssr75870	transcription start site region 75870	57 bp downstream
Tssr75871	transcription start site region 75871	98 bp downstream
Tssr75872	transcription start site region 75872	499 bp downstream
Tssr75873	transcription start site region 75873	521 bp downstream
Tssr75874	transcription start site region 75874	730 bp downstream
Tssr75875	transcription start site region 75875	767 bp downstream
Tssr75876	transcription start site region 75876	799 bp downstream
Tssr75877	transcription start site region 75877	875 bp downstream
Tssr75878	transcription start site region 75878	1151 bp downstream
Tssr75879	transcription start site region 75879	1173 bp downstream
Tssr75880	transcription start site region 75880	1223 bp downstream