rs262909713 SNP Detail

Summary

• ID
  rs262909713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127483188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCACACCC CTGTTCCCCC
  AGTAACCAGT AGACCACAGA GTTCATTTCT TCTCTTCCTG ACCATAATCT GGCCTTGTGA
  TCTGTTTTAG CAGTGACACA TGGTTTAATA GACACTGTGC ATCTTACCTA GTTGGCACAG
  TAAAATGTCC ATCTTTCTGT GTTTGGTTTT CTCCTTAGGA AAATCATCTT CTAAAATGTC
  W
  GTTTTGTCCA CACTTTTACA TGATAATTTT GCTGGTTATA AAATTCTAGG TTCAAGTTAT
  TTTGTCTTAG ATTTGTGTTA ATTCCAGTGC TTTCTGAAGT ATTTCTTCTT CTTTTTCCTT
  CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT
  CTTCTTCTTT TTCTTCTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320956102	CHEV_3_127392457	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262909713					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127483188 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	987 bp upstream
Tssr35587	transcription start site region 35587	1209 bp downstream
Tssr35588	transcription start site region 35588	1752 bp downstream