rs262911820 SNP Detail

Summary

• ID
  rs262911820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96077807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACAGAG AGGTCCACCA
  GTGGGAAGGG GAGAGACTGC CTCTACCTCT TCTCTAAATC CCCATCTCCT TTCCTCGAGC
  TGTTAGTAGG CCAGGCAATG GGTATGCTTT ATTTTCCTTC AGCCGGTGAG TGGGTTCAAA
  CCAGCCATAA GGTCCTTTGC CAGGTCTCCT GATTCTGAGA GGTGAGAGGG GTCGGAGGCA
  Y
  CCAGAGAGTC AACTCTAGGA AAGACCACCC TCAGGGAAGG TAAACACCAT TTCTCTAGTC
  TGTGGGGAGG TGATAAAGTG TGCTGCCTTC TGCCCTGGTT CTCAAGTGGC ATACCAATTC
  CCCCAGTTAA GGACACTAGG GCTGACCTGG GGTTGGACGA AGTTGCCGTG GCCCTTCGAT
  CACCTTAGCG TCCACGCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322811395	CHEV_8_97875079	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262911820					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96077807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	428 bp proximal
Mmp15	matrix metallopeptidase 15	1117 bp upstream
Rr668225	regulatory region 668225	1583 bp distal
Rr668226	regulatory region 668226	599 bp proximal
Rr668227	regulatory region 668227	1100 bp proximal
Tssr78982	transcription start site region 78982	1057 bp upstream
Tssr78983	transcription start site region 78983	1079 bp upstream