rs262928769 SNP Detail

Summary

• ID
  rs262928769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120881540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCTCTCC CCTCCCCCTC
  CCCGCTGTCC CCCCCCGGCC CCCGCCCCCA GTCCTTTTCC CACGCCCTCT GACACCCCAC
  CACCGAGGCC CGCTGGCCCC CGCCTCTAGG CCTCCTTCTT CCTCTCCCGG GTCCCCGACC
  ATCCCCAGAC ACGCTCCGAG CTCTGCCCCC CGGCCTGCAG TCCCCAAGAC CGGCCTGTCC
  Y
  TCCAGCCCTT CCCCGCACCC CACCCCGACC CGCCGCGCCG CGCCCAGCCC CCCGGCCGCG
  CTCGCACAGC GGCCGTTGGT GTCTGGCCGA GGCCGGTGCC CGGGCCCTCG GCTGCGGGGA
  TGCCGAACGT CCACTCCGGC CCTCCGCAGG CCTCGGCCTG CCGGGGACCC CGCCCGCCGA
  TCCGCAAGGC CCCCGGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss384952592	MGP_WTSI_11_120852028	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs262928769					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384952592	MGP_WTSI_11_120852028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120881540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	within coordinates
Csnk1d	casein kinase 1, delta	within coordinates
Gm53204	predicted gene, 53204	729 bp upstream
Gm57327	predicted gene, 57327	461 bp upstream
Rr403207	regulatory region 403207	485 bp upstream
Rr461862	regulatory region 461862	1822 bp distal
Rr461863	regulatory region 461863	1503 bp distal
Rr461864	regulatory region 461864	within coordinates
Rr461865	regulatory region 461865	193 bp proximal
Rr461866	regulatory region 461866	345 bp proximal
Rr461867	regulatory region 461867	368 bp proximal
Rr461868	regulatory region 461868	472 bp proximal
Rr461869	regulatory region 461869	606 bp proximal
Rr461870	regulatory region 461870	721 bp proximal
Rr461871	regulatory region 461871	1894 bp proximal
Tssr106388	transcription start site region 106388	139 bp downstream
Tssr106389	transcription start site region 106389	668 bp upstream
Tssr106390	transcription start site region 106390	698 bp upstream
Tssr112430	transcription start site region 112430	306 bp downstream
Tssr112431	transcription start site region 112431	325 bp downstream
Tssr112432	transcription start site region 112432	364 bp downstream
Tssr112433	transcription start site region 112433	389 bp downstream
Tssr112434	transcription start site region 112434	546 bp downstream
Tssr112435	transcription start site region 112435	591 bp downstream