rs262937259 SNP Detail

Summary

• ID
  rs262937259
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGCAAG TGCACCTCCC
  TCTTAACACC TTGGAAGGCC CCAAGCCTTT TCCCCAATTC TTGCCGTCTG TCGCCTCCAG
  GGGGCGCTCC ACCCGTGTCT CAGAGGAACA GACAACCTAG GTTTAGTTTA GTTGTAATGC
  CAAGCATCAG GCAGTGTCTC GTCTAGTCTC CGCCCCCCCT CGCCCCCCCC CCCCGCCCTG
  S
  CACGAGGGGT TGACTCTGTG CTAGTTCTTC AAGGAATCAT CTGCCCCCAG AATTCTTTTT
  TTTTTTTAAT TAAAGATTTA TTTATTATTA TATGTAAGTA CACTGTAGCT GTCTTCAGAC
  ACACCAGAAG AGGGAGTCAG ATCTTGTTAC AGATGGTTGT GAGCCACCAT GTGGTTACTG
  GGATTTGAAC TCTGGACCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824627	MGP_WTSI_5_135489290	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262937259					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824627	MGP_WTSI_5_135489290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042274 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1245 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	632 bp upstream
Gm73578	predicted gene, 73578	18 bp upstream
Rr110217	regulatory region 110217	474 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1527 bp proximal
Rr124504	regulatory region 124504	73 bp distal
Tssr1662	transcription start site region 1662	683 bp upstream
Tssr1663	transcription start site region 1663	250 bp upstream
Tssr1664	transcription start site region 1664	216 bp upstream
Tssr53717	transcription start site region 53717	659 bp upstream
Tssr53718	transcription start site region 53718	612 bp upstream
Tssr53719	transcription start site region 53719	597 bp upstream
Tssr53720	transcription start site region 53720	552 bp upstream
Tssr53721	transcription start site region 53721	295 bp upstream
Tssr53722	transcription start site region 53722	262 bp upstream