rs262937862 SNP Detail

Summary

• ID
  rs262937862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112639166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCTCTTC CAGAGGGACA
  CCTAGGTATC CTTCAAATAT CCCCAAGTCT GGACATTCTG GGAAAGTGCA CCTGAACAGC
  CCTTGACCAG CAAGCCTGTG TTGTCCCTCC ACCTGGAGTT CATGTGGACA ATCCCCAGGA
  AAAGACTGGA AGGCCGCCGT GGAATAGATC CCAACTAGGG TCTACTACAG CTGACTGGCA
  R
  CCCCCTATGT CATCTCTCTA GCCCAGAAGA CACAAGCTGG CACCCAGAGT CTCTGTCACT
  TTGCCTTGTA TGAAGCTAAA TGTGGAACAA AAGGGAGGCC GGCTGCTATG TGTCAAATGC
  CAAATGCCAA AGTAGGAAAG ACCACACCTG GCCCAAGAAG GAAAGAGCCC TTCCCTCAGC
  AAGCAGGTGG CGACTAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170078	CHEV_12_113910943	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262937862					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112639166 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	530 bp proximal
Gm30150	predicted gene, 30150	1756 bp upstream
Rr473550	regulatory region 473550	1179 bp distal
Rr473551	regulatory region 473551	678 bp distal
Rr473552	regulatory region 473552	176 bp proximal
Rr473553	regulatory region 473553	323 bp proximal
Rr473554	regulatory region 473554	1534 bp proximal
Rr473555	regulatory region 473555	1647 bp proximal
Rr473556	regulatory region 473556	1690 bp proximal
Tssr115391	transcription start site region 115391	1680 bp upstream
Tssr117874	transcription start site region 117874	1534 bp upstream
Tssr117875	transcription start site region 117875	1155 bp upstream
Tssr117876	transcription start site region 117876	688 bp upstream
Tssr117877	transcription start site region 117877	1284 bp downstream
Tssr117878	transcription start site region 117878	1343 bp downstream
Tssr117879	transcription start site region 117879	1461 bp downstream
Tssr117880	transcription start site region 117880	1611 bp downstream
Tssr117881	transcription start site region 117881	1642 bp downstream