rs262942218 SNP Detail

Summary

• ID
  rs262942218
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:25776901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGGAG AGGGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAGCAGGCAA TCAAGAGTGC TAGCTGAATC
  AGCCCCTCAT GTTGTGGATC TACAAGCAAC CCCCAACACC TCAGGAGTGA AACTCCAAAG
  CCTACCCATT CTCCTTTGGC TTCTGTGTCG TCCCCCCCCA ACCCCCCACC CCCCCCCCCC
  S
  CCGCCGCCAC AGCAGCTATT GTGTGAGAGA CCAGCAGACA GCCTGAAACC CTATGGGTTG
  CCAAAACCTC AGCCAAGAAC TATAAGACCC ACGTCTGGCT GTGCTGCTGC AGCAGGCCCC
  TAACCCCTTA CTCCAGGTGA GACTAGGTAG AGTGCTTTGA CTGAGAGAGT CCTCACATCT
  GCATCTGTGC AGAACTGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	DBA/2J	KK/HlJ	MA/MyJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss393388645	MGP_WTSI_15_25706570	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	CAST/EiJ	DBA/2J	KK/HlJ	MA/MyJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs262942218					SNP	G	G	G	C	G	G	C	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393388645	MGP_WTSI_15_25706570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:25776901 () rs orientation: forward

Symbol	Name	Function Class
Myo10	myosin X	within coordinates
Tssr130835	transcription start site region 130835	418 bp downstream
Tssr130836	transcription start site region 130836	1304 bp upstream