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rs262965493 SNP Detail
Summary
  • ID
    rs262965493
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128807 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCCGA GTTCTGGGAT TAAAGGCATG
Y
GCCACCATGC CCGGCTCATC TCATT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198933 CHEV_7_51734753 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs262965493 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128807 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2225 transcription start site region 2225 1964 bp downstream
Tssr2226 transcription start site region 2226 1438 bp downstream
Tssr2227 transcription start site region 2227 363 bp downstream
Tssr2228 transcription start site region 2228 695 bp upstream
Tssr2229 transcription start site region 2229 971 bp upstream
Tssr2230 transcription start site region 2230 1150 bp upstream
Tssr2231 transcription start site region 2231 1283 bp upstream
Tssr2232 transcription start site region 2232 1458 bp upstream
Tssr2233 transcription start site region 2233 1491 bp upstream
Tssr2234 transcription start site region 2234 1650 bp upstream
Tssr66244 transcription start site region 66244 1985 bp downstream
Tssr66245 transcription start site region 66245 1923 bp downstream
Tssr66246 transcription start site region 66246 1895 bp downstream
Tssr66247 transcription start site region 66247 1848 bp downstream
Tssr66248 transcription start site region 66248 1807 bp downstream
Tssr66249 transcription start site region 66249 1784 bp downstream
Tssr66250 transcription start site region 66250 1765 bp downstream
Tssr66251 transcription start site region 66251 1740 bp downstream
Tssr66252 transcription start site region 66252 1709 bp downstream
Tssr66253 transcription start site region 66253 1681 bp downstream
Tssr66254 transcription start site region 66254 1633 bp downstream
Tssr66255 transcription start site region 66255 1606 bp downstream
Tssr66256 transcription start site region 66256 1557 bp downstream
Tssr66257 transcription start site region 66257 1546 bp downstream
Tssr66258 transcription start site region 66258 1503 bp downstream
Tssr66259 transcription start site region 66259 1467 bp downstream
Tssr66260 transcription start site region 66260 1360 bp downstream
Tssr66261 transcription start site region 66261 1339 bp downstream
Tssr66262 transcription start site region 66262 1332 bp downstream
Tssr66263 transcription start site region 66263 1320 bp downstream
Tssr66264 transcription start site region 66264 1296 bp downstream
Tssr66265 transcription start site region 66265 1253 bp downstream
Tssr66266 transcription start site region 66266 1236 bp downstream
Tssr66267 transcription start site region 66267 1199 bp downstream
Tssr66268 transcription start site region 66268 1183 bp downstream
Tssr66269 transcription start site region 66269 1147 bp downstream
Tssr66270 transcription start site region 66270 1112 bp downstream
Tssr66271 transcription start site region 66271 1080 bp downstream
Tssr66272 transcription start site region 66272 1028 bp downstream
Tssr66273 transcription start site region 66273 1010 bp downstream
Tssr66274 transcription start site region 66274 1005 bp downstream
Tssr66275 transcription start site region 66275 985 bp downstream
Tssr66276 transcription start site region 66276 965 bp downstream
Tssr66277 transcription start site region 66277 945 bp downstream
Tssr66278 transcription start site region 66278 901 bp downstream
Tssr66279 transcription start site region 66279 856 bp downstream
Tssr66280 transcription start site region 66280 834 bp downstream
Tssr66281 transcription start site region 66281 794 bp downstream
Tssr66282 transcription start site region 66282 777 bp downstream
Tssr66283 transcription start site region 66283 763 bp downstream
Tssr66284 transcription start site region 66284 751 bp downstream
Tssr66285 transcription start site region 66285 737 bp downstream
Tssr66286 transcription start site region 66286 698 bp downstream
Tssr66287 transcription start site region 66287 662 bp downstream
Tssr66288 transcription start site region 66288 637 bp downstream
Tssr66289 transcription start site region 66289 555 bp downstream
Tssr66290 transcription start site region 66290 517 bp downstream
Tssr66291 transcription start site region 66291 491 bp downstream
Tssr66292 transcription start site region 66292 459 bp downstream
Tssr66293 transcription start site region 66293 437 bp downstream
Tssr66294 transcription start site region 66294 413 bp downstream
Tssr66295 transcription start site region 66295 148 bp downstream
Tssr66296 transcription start site region 66296 within coordinates
Tssr66297 transcription start site region 66297 25 bp upstream
Tssr66298 transcription start site region 66298 50 bp upstream
Tssr66299 transcription start site region 66299 119 bp upstream
Tssr66300 transcription start site region 66300 126 bp upstream
Tssr66301 transcription start site region 66301 150 bp upstream
Tssr66302 transcription start site region 66302 164 bp upstream
Tssr66303 transcription start site region 66303 205 bp upstream
Tssr66304 transcription start site region 66304 213 bp upstream
Tssr66305 transcription start site region 66305 223 bp upstream
Tssr66306 transcription start site region 66306 257 bp upstream
Tssr66307 transcription start site region 66307 314 bp upstream
Tssr66308 transcription start site region 66308 367 bp upstream
Tssr66309 transcription start site region 66309 388 bp upstream
Tssr66310 transcription start site region 66310 426 bp upstream
Tssr66311 transcription start site region 66311 503 bp upstream
Tssr66312 transcription start site region 66312 519 bp upstream
Tssr66313 transcription start site region 66313 540 bp upstream
Tssr66314 transcription start site region 66314 548 bp upstream
Tssr66315 transcription start site region 66315 568 bp upstream
Tssr66316 transcription start site region 66316 627 bp upstream
Tssr66317 transcription start site region 66317 639 bp upstream
Tssr66318 transcription start site region 66318 684 bp upstream
Tssr66319 transcription start site region 66319 707 bp upstream
Tssr66320 transcription start site region 66320 734 bp upstream
Tssr66321 transcription start site region 66321 752 bp upstream
Tssr66322 transcription start site region 66322 772 bp upstream
Tssr66323 transcription start site region 66323 818 bp upstream
Tssr66324 transcription start site region 66324 847 bp upstream
Tssr66325 transcription start site region 66325 877 bp upstream
Tssr66326 transcription start site region 66326 918 bp upstream
Tssr66327 transcription start site region 66327 932 bp upstream
Tssr66328 transcription start site region 66328 948 bp upstream
Tssr66329 transcription start site region 66329 987 bp upstream
Tssr66330 transcription start site region 66330 1006 bp upstream
Tssr66331 transcription start site region 66331 1020 bp upstream
Tssr66332 transcription start site region 66332 1041 bp upstream
Tssr66333 transcription start site region 66333 1089 bp upstream
Tssr66334 transcription start site region 66334 1101 bp upstream
Tssr66335 transcription start site region 66335 1110 bp upstream
Tssr66336 transcription start site region 66336 1119 bp upstream
Tssr66337 transcription start site region 66337 1137 bp upstream
Tssr66338 transcription start site region 66338 1193 bp upstream
Tssr66339 transcription start site region 66339 1244 bp upstream
Tssr66340 transcription start site region 66340 1289 bp upstream
Tssr66341 transcription start site region 66341 1334 bp upstream
Tssr66342 transcription start site region 66342 1396 bp upstream
Tssr66343 transcription start site region 66343 1428 bp upstream
Tssr66344 transcription start site region 66344 1573 bp upstream
Tssr66345 transcription start site region 66345 1606 bp upstream
Tssr66346 transcription start site region 66346 1662 bp upstream
Tssr66347 transcription start site region 66347 1700 bp upstream
Tssr66348 transcription start site region 66348 1741 bp upstream
Tssr66349 transcription start site region 66349 1765 bp upstream
Tssr66350 transcription start site region 66350 1793 bp upstream
Tssr66351 transcription start site region 66351 1801 bp upstream
Tssr66352 transcription start site region 66352 1837 bp upstream
Tssr66353 transcription start site region 66353 1911 bp upstream
Tssr66354 transcription start site region 66354 1925 bp upstream
Tssr66355 transcription start site region 66355 1952 bp upstream
Tssr66356 transcription start site region 66356 1969 bp upstream
Tssr66357 transcription start site region 66357 1983 bp upstream
Tssr66358 transcription start site region 66358 1995 bp upstream
Tssr72199 transcription start site region 72199 1900 bp upstream
Tssr72200 transcription start site region 72200 942 bp upstream
Tssr72201 transcription start site region 72201 432 bp upstream
Tssr72202 transcription start site region 72202 410 bp downstream
Tssr72203 transcription start site region 72203 796 bp downstream
Tssr72204 transcription start site region 72204 1392 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory