rs262980565 SNP Detail

Summary

• ID
  rs262980565
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTGTGTT TGGTTCCCAG
  AACTCCCCCC CCCCCCGTTT GTCTCCCTCC CTCTCTTTCT GTCTCTCTCT CTCTCTGTCT
  CTCTCTCCTC TCTCTGTCTC TCTCTCCTCT CTCTCTCCCT CTCTCCCTTT CTCTCTCTCT
  CTCTCTCTCT CTCTCTTAGT TTGTTGTCAA TGATGTTGCT GTTTTGTATA CAAGGTCTCC
  T
  GTGGTTCCAG ATTGGACTCT AACTAGGTGT GCAGCCGAAG ATGAGCTCAG ACTTCTGATC
  CTTCTGCTTC TACTGCTGAG AGCTAGAATC ACAGATGTGC CCCACACACC CGCAGCTAGT
  TTCTCAAAGA CCTTTTGATA CAGTGGCTCA AACAACTGAG AATGGTAAAA CTCACTTAAA
  GATGTTAAGA AACTATGATA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759451	CHEV_11_79087840	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262980565					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165164 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	411 bp proximal
Gm44787	predicted gene 44787	390 bp upstream
Rr241861	regulatory region 241861	36 bp proximal
Rr251784	regulatory region 251784	95 bp distal
Rr251785	regulatory region 251785	1638 bp proximal
Tssr109475	transcription start site region 109475	447 bp upstream