rs262985139 SNP Detail

Summary

• ID
  rs262985139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96190861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTCCCT ACTTAAGTCA
  GGCTAGGATT GTTGATCCGG AAGAGGTTAG GGGACTCAGT CTCTGGTCCT GTATTCCTTT
  ATGTTCTCCC TAGCTCTTGT CCGGATCTGA GGGGTGGGGG GTGCCCCGCA CCCAAAGACC
  ACTCCATTAA AAACAAGAGT GCGTCATGAA AGGGGAGGGG TGGCATGACG CCGGCAAGGG
  Y
  GAGTTTACTT GGGTCCTGGA TTGTGTTTCC CTGGGGCTGG GGGAGGAGAA CTGGGGAAGG
  GGGACCAGGG AGCTGTGAGA CACTACCATA GGGTCGTATA GTCTGAGGAA GGAAGAAGAG
  AGGACAGGCG GAGGGAGTGA GAAGAACAAA CTGGCTCCTG GGTCTCAGGT TGGATTATTT
  GTGGGCTTCA AGTCCCAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384366445	MGP_WTSI_11_96161349	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262985139					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366445	MGP_WTSI_11_96161349	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96190861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	within coordinates
Cpgi3642	CpG island 3642	512 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	854 bp distal
Rr455362	regulatory region 455362	469 bp proximal
Tssr3658	transcription start site region 3658	770 bp downstream
Tssr104480	transcription start site region 104480	1265 bp downstream
Tssr104481	transcription start site region 104481	1237 bp downstream
Tssr104482	transcription start site region 104482	1214 bp downstream
Tssr104483	transcription start site region 104483	952 bp downstream
Tssr104484	transcription start site region 104484	933 bp downstream
Tssr104485	transcription start site region 104485	906 bp downstream
Tssr104486	transcription start site region 104486	887 bp downstream
Tssr104487	transcription start site region 104487	813 bp downstream
Tssr104488	transcription start site region 104488	783 bp downstream