rs262985994 SNP Detail

Summary

• ID
  rs262985994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT GGGTGGGGCT CTGCTCTTTA
  Y
  GAGATCTCCT TATTACCCAA GATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068353	CHEV_1_154655527	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262985994					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684148 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	497 bp distal
Rr420548	regulatory region 420548	1287 bp proximal
Rr420549	regulatory region 420549	1620 bp proximal
Tssr9423	transcription start site region 9423	607 bp downstream
Tssr9424	transcription start site region 9424	571 bp downstream
Tssr9425	transcription start site region 9425	521 bp downstream
Tssr9426	transcription start site region 9426	499 bp downstream
Tssr9427	transcription start site region 9427	481 bp downstream
Tssr9428	transcription start site region 9428	463 bp downstream
Tssr9429	transcription start site region 9429	438 bp downstream
Tssr9430	transcription start site region 9430	1710 bp upstream
Tssr14234	transcription start site region 14234	84 bp upstream
Tssr14235	transcription start site region 14235	1527 bp downstream