rs262988313 SNP Detail

Summary

• ID
  rs262988313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGAGTAA CTATACACAC
  ACACACATAC ACACACTTAG ATGTTGTGTT TAGTGTGTGT GTGTGTGTGT GTGTGTGAGA
  GAGAGAGAGA GAGAGAGAGA GAAGGAGGAG GAGGAGGAGG AAGTTATGTG TTGTGAGAAA
  GTGTGTGTAA GAAACATTGT AACAGACTGT AACCAAGTGC TTACAGGAGA TTATATGAAA
  R
  AGACCATTAG ATGCATGAGA CCCTGTCTGA TAGAGTATTA TAAAAGCCTG TGTCTAATTG
  TGTGCCTGTA CACAACAGAT TGTGGAAGAC TGTATACCAG AGTCTTTTGT GACAGGACAG
  TGTGGGAGAT CATAGGTGTT GAAAGTTTGT GTGAGGATGT AGGTATACAG AAGAGGGCAA
  CTGAGAATAA GAAGCTCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957997	CHEV_3_127599939	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262988313					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	498 bp distal
Fam241a	family with sequence similarity 241, member A	698 bp upstream
Rr398009	regulatory region 398009	448 bp downstream
Rr584896	regulatory region 584896	1002 bp distal
Rr584897	regulatory region 584897	207 bp distal
Tssr35607	transcription start site region 35607	1508 bp upstream
Tssr35608	transcription start site region 35608	788 bp upstream
Tssr35609	transcription start site region 35609	751 bp upstream
Tssr35610	transcription start site region 35610	684 bp upstream