rs262994079 SNP Detail

Summary

• ID
  rs262994079
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191710689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATATCCCC ACTTGCCCAG GCATTCATTC GCCCATCATT
  ACACATGCTG GGATGATGGA GCTGATGGCC TCTGAGATCC ATGCCATCTC TGTGGGGAAC
  W
  TGAGGGCCAG GCTACAGGAA GAAGTTGACT CTTAGACACT GGTTTGAGGG ATGAGCAGGT
  CTTTGTCAGG TAGGTAAAAG ACCCACAGGT CGGGCAGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320196694	CHEV_1_193802609	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs262994079					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191710689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70534	predicted gene, 70534			544 bp upstream
Rd3	retinal degeneration 3			Intron
				mRNA-UTR
Rr426276	regulatory region 426276			1345 bp distal
Rr426277	regulatory region 426277			1163 bp distal
Rr426278	regulatory region 426278			559 bp proximal
Tssr10797	transcription start site region 10797			1339 bp downstream
Tssr10798	transcription start site region 10798			1328 bp downstream
Tssr10799	transcription start site region 10799			1283 bp downstream
Tssr10800	transcription start site region 10800			469 bp downstream
Tssr10801	transcription start site region 10801			437 bp downstream