rs262994418 SNP Detail

Summary

• ID
  rs262994418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAGTTA ATCCTGTAGT
  TAGTTGGTCT TTAAGGAAGA GTAGTCGAGG CAAGGCTGCT CTGACTGGGG GAGCTTCCTC
  CAAGTGCTAG GAAGGCTAAG TAAACTTTTA TTCCAATGAC AGACTTGTAA AATGTCAGTT
  CCTTGCTGAG AATTGCTGGG CTTTTTTCCC CTGTCTGTTT TATAATGTTT ATTCTATGTC
  Y
  CTACTTAAAC TTGGGCAGTC AAGGAGGCTT TTGGAGCTGT AACCTGTAGG CCTAGGGAGG
  GAACCTGCAG GGCCACTTTG GAGCCCTCTT AAGGGAGGCT CAGGGAGGAG AGAAAGCTTC
  TGAGACATGA GTGTTCAGAA CAGAGGCCCA GGCAGACCAT AGAAGGCAAG CAGGAGGAGG
  AAGTCAGCCC TGGGCTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350468194	MGP_WTSI_1_92951492	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs262994418					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468194	MGP_WTSI_1_92951492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982637 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	1187 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1853 bp downstream
Tssr8032	transcription start site region 8032	1723 bp downstream
Tssr8033	transcription start site region 8033	1395 bp downstream
Tssr8034	transcription start site region 8034	1383 bp downstream
Tssr8035	transcription start site region 8035	1365 bp downstream
Tssr8036	transcription start site region 8036	1353 bp downstream
Tssr8037	transcription start site region 8037	923 bp downstream
Tssr8038	transcription start site region 8038	1674 bp upstream
Tssr8039	transcription start site region 8039	1707 bp upstream
Tssr8040	transcription start site region 8040	1732 bp upstream
Tssr8041	transcription start site region 8041	1758 bp upstream
Tssr12928	transcription start site region 12928	1867 bp upstream
Tssr12929	transcription start site region 12929	1065 bp upstream
Tssr12930	transcription start site region 12930	1577 bp downstream