rs262998520 SNP Detail

Summary

• ID
  rs262998520
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:126768618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCAATATA TAAAGTAAAA AAGATAGCTA GTGGTGTTAC
  TCATGGAGGA AGTGCTTGCC TGGCATGCAG GAAGCTGGAA ACGAAGTGAT GGGGGGGGGG
  D
  GTGAGGTGAC AGCCAATAAA ATTGTCACCA GGAGAACGGA TGTTGTAAAG CAGAGCCTTC
  CTGCCTGTTC TCCCTCCCCT GTGGGCCTGT CTGTCACTC                       
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss369989901	MGP_WTSI_6_126741673	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	G	T	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs262998520					SNP	A	A	A	A	A	A	A	A	A	T	A	A	G	T	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369989901	MGP_WTSI_6_126741673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:126768618 () rs orientation: forward

Symbol	Name	Function Class
Gm29788	predicted gene, 29788	794 bp downstream
Gm67331	predicted gene, 67331	within coordinates
Rr638910	regulatory region 638910	363 bp proximal
Rr638911	regulatory region 638911	433 bp proximal