rs263006593 SNP Detail

Summary

• ID
  rs263006593
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15079095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGAATT CTAGGTCTGA
  AAAAGGGGAC AGAACACCTG AATAAGGAAG ATGGTCTCAA GAGTCACTAC TTGCAAATCA
  ATTTTTATTC ATAAGAAATA GAATTTTAAA AAAAAAGGTT TTAAAAGTTC AATTAATATA
  GAGTTAAAGG CAAAAACAAT GAAATACAAG AACAAGAACA TATAACTTCT AAATAACATA
  T
  CAATACTCAA AGAACAAAAA CCAAACAGAT TTCTGCACTT TTAGCCGCAC AGCCCTACAG
  CCTGCTGCTC CTCTTGGACA CTTGGTGGCA GTGCAGTCGC CTCAGTTCTC TGCCAAGAGA
  CTATGTCTGA AGAGAAAAGG GAACAACGCA CTGGATCAGC CATGGCTTCC TAGTAAAGGC
  CTATTCACCC TAAGAAAATG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	CBA/J	I/LnJ	LG/J	NOD/ShiLtJ	PWK/PhJ	SEA/GnJ
ss364069368	MGP_WTSI_5_15029081	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	CBA/J	I/LnJ	LG/J	NOD/ShiLtJ	PWK/PhJ	SEA/GnJ
rs263006593					SNP	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364069368	MGP_WTSI_5_15029081	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15079095 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	1561 bp distal
Gm17019	predicted gene 17019	within coordinates
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	106 bp proximal
Rr121523	regulatory region 121523	760 bp distal
Rr121525	regulatory region 121525	205 bp proximal
Rr121527	regulatory region 121527	1021 bp proximal
Rr121528	regulatory region 121528	1496 bp proximal
Rr128307	regulatory region 128307	1195 bp distal