rs263009374 SNP Detail

Summary

• ID
  rs263009374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGAGAAGC AGCCAGCAGC CCAGAGGACG
  TCATTACCCC CAGCCTCATT TCCAACAGTG TTCTTGTCCT TTGTTCCCTA GGACCTGGCT
  CAGAGGCTCG TGAAGTGTCT CTGAGGTTGA CTTCTGCCCT CAACTCTGCT CCCAGCTTGC
  Y
  CTTCTGGGCC TGGGCTCCTG GCATCTGCTT TATCGGGATT CTCAAGAGGG ACAGCTGGTT
  TATGTTACAA GCCTGTTCCC TGCATATCTG CTCTGGTTTT AAATAGCTTT ATCTGAGCAG
  CTGGAGGACC ACATGAGCTT ATATGGCGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993823	CHEV_1_137732636	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263009374					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763797 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1196 bp distal
Rr419293	regulatory region 419293	1632 bp distal
Rr419294	regulatory region 419294	within coordinates
Rr419295	regulatory region 419295	365 bp proximal
Rr419296	regulatory region 419296	833 bp proximal
Rr419297	regulatory region 419297	1690 bp proximal
Tnnt2	troponin T2, cardiac	295 bp upstream
Tssr9005	transcription start site region 9005	321 bp upstream