rs263010257 SNP Detail

Summary

• ID
  rs263010257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123366058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTATCCAG TTTACTCAGC
  CTTCAGATGA GTGAATGAAA AAAAGTGTAA GCCAGATGTG GTGGCTTTAA TCCCAGCACT
  TGGGAGCAGA GGCAGGAGGA TTTCTGAGTT TGAGGCCAGC CTGGTCTACA GAGTGAGTTC
  CAGGACAGCC AGGGATACAC AGAGAAACCC TGTCTTGAAA AACGGGGTGG GGTGGGGGGG
  K
  GGGGAAACGG ACGGATGGAG GGACGGGGAC AGAATGAAAA AGAAAGGAAT GAACAAGAAA
  AGTGGAAATG AGTCAGGATA AAGTGGGAGT AAATACCTAT GTCCTCTATG GGCCTATTTA
  TCTCTACCGG GTCATCTGAA AACCACGTGG TCTATCTAGC CGGTGACCCC GCCCACTTCC
  AAGCTCCACC CTTCATCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J
ss366534569	MGP_WTSI_5_123678004	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	G	G	T	G	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	SWR/J
rs263010257					SNP	T	T	T	T	T	T	T	G	G	T	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366534569	MGP_WTSI_5_123678004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123366058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	109 bp proximal
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	195 bp upstream
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	76 bp upstream
Tssr48774	transcription start site region 48774	221 bp upstream
Tssr48775	transcription start site region 48775	243 bp upstream