rs263015471 SNP Detail

Summary

• ID
  rs263015471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93017716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAACGATG AATTGTAAAT
  TGCTTTTAAC CGTGTTGTTT CACCCGTGGG GGACCCTAAC AGTCATAGCA GGTGCCTTCC
  TTCCACCCTA GACACCGGCC TAGGCCTGAG AATGGATGTT TCATAAACCC GTAGGGGTAT
  GTTTGCAGTC CGGGAGAAAG GGGCGCTGTC TTCAGAACTT CCGAGAAAGT CCTGGGTGGC
  R
  CAGCGGCAGG TTGTCCCCGT CCGGGGATCC CCCTAGCCAA GCGAGGGTGC GCCCTCCGCA
  GGCGGCTCCC GGTAGGCCCT CCGTTTCAGC TCTGGGTCTC CCCCCCAACC CCTCTGTGCC
  CGCCCCGGCC ACCTCGGGGG CGAGGCAGCC CAGCGCGTGG GAGGGGACGG CGCGCCATTG
  GCTTGTGCGC GGCACTAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354848751	MGP_WTSI_2_93027528	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263015471					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354848751	MGP_WTSI_2_93027528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93017716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11943	CpG island 11943	within coordinates
Rr561108	regulatory region 561108	823 bp distal
Rr561109	regulatory region 561109	within coordinates
Rr561110	regulatory region 561110	46 bp proximal
Rr561111	regulatory region 561111	224 bp proximal
Rr561112	regulatory region 561112	1595 bp proximal
Rr561113	regulatory region 561113	1811 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	mRNA-UTR
Tssr18978	transcription start site region 18978	563 bp downstream
Tssr18979	transcription start site region 18979	171 bp upstream
Tssr18980	transcription start site region 18980	188 bp upstream
Tssr18981	transcription start site region 18981	203 bp upstream
Tssr18982	transcription start site region 18982	401 bp upstream