rs263016730 SNP Detail

Summary

• ID
  rs263016730
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126047100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTAAGTA TCAGGAAGAC
  CTCACACAGC TGGAGACAGC TGGCTTTGGG CAGCTTGAAT TGGGAAAAGC TGGTATCAGG
  GACGAGGTTG GTCCCAAAGG CTGGGAAAGG TGGTTGAGTC CCTTCTTGCT TACCCCCAAT
  TGCCATGTAG CGGAAAAAGA GCCAGCCACT GATAAGAGGC TCCTTGGGAC TCCTGGGGGG
  S
  CGGTCCATGA TGTCCAGGTC AGGTGGGTTG AATCCCAGGG CAGTAGCCGG GAGCCCATCA
  GTCACCAAGT TCACCCAGAG CAGCTGCACA GGGATCAGAG CCTCAGGCAG CCCCAAGGCT
  GCTGTCAAGA AGATACTGGC AGAGGAAGAA AGTCATGCAT TCATTTGTTT CAAGTCCCAT
  GATCAACCCC CTCAGCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068758	MGP_WTSI_7_133591442	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263016730					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068758	MGP_WTSI_7_133591442	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126047100 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr2394	transcription start site region 2394	288 bp upstream
Tssr69022	transcription start site region 69022	1870 bp downstream
Tssr69023	transcription start site region 69023	14 bp downstream
Tssr74663	transcription start site region 74663	1874 bp upstream
Tssr74664	transcription start site region 74664	1340 bp upstream
Tssr74665	transcription start site region 74665	1014 bp upstream
Tssr74666	transcription start site region 74666	955 bp upstream
Tssr74667	transcription start site region 74667	927 bp upstream
Tssr74668	transcription start site region 74668	724 bp upstream
Tssr74669	transcription start site region 74669	710 bp upstream
Tssr74670	transcription start site region 74670	454 bp upstream
Tssr74671	transcription start site region 74671	433 bp upstream
Tssr74672	transcription start site region 74672	416 bp upstream
Tssr74673	transcription start site region 74673	277 bp upstream
Tssr74674	transcription start site region 74674	249 bp upstream
Tssr74675	transcription start site region 74675	235 bp upstream
Tssr74676	transcription start site region 74676	26 bp upstream
Tssr74677	transcription start site region 74677	within coordinates
Tssr74678	transcription start site region 74678	24 bp downstream
Tssr74679	transcription start site region 74679	48 bp downstream
Tssr74680	transcription start site region 74680	66 bp downstream
Tssr74681	transcription start site region 74681	93 bp downstream
Tssr74682	transcription start site region 74682	107 bp downstream
Tssr74683	transcription start site region 74683	305 bp downstream
Tssr74684	transcription start site region 74684	408 bp downstream
Tssr74685	transcription start site region 74685	434 bp downstream
Tssr74686	transcription start site region 74686	666 bp downstream
Tssr74687	transcription start site region 74687	720 bp downstream
Tssr74688	transcription start site region 74688	824 bp downstream
Tssr74689	transcription start site region 74689	893 bp downstream
Tssr74690	transcription start site region 74690	1314 bp downstream
Tssr74691	transcription start site region 74691	1357 bp downstream