rs263026704 SNP Detail

Summary

• ID
  rs263026704
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTCAGGAT TGGGGTTCCT
  AACAGAAGTA TGGATGAAGG GGTACTCATA GGAGCAACTG CGTCACTCCC ACACAGCACC
  ACAGCTCCGT GGGTGCGAGC GATGACTCAT TAAAGCCGCA ATCCTGGAGC TCTCTGCACT
  TTTGTATACA TCCTGGCAAT CCAAATCTCT CCTTTGTTCT TCAGTCCTTA GAATCTCCAA
  C
  CCCCCACCCC GCCCCCACCC CCGCCCCGCC CCCCGTTGTT TACACTTTTT ATACCGCTGA
  GAAAGAGCCC TCAAGAATCT TCCAAATTTC TGCTCCTATA GAGAACCTTT CACATCTCCA
  CCTCCACCCC CACGCCCTTG GAGAGGATGT TTGTATTTGC ATGGAAATGT TTTTACAGCA
  ATCATTAATA GCCTAGTCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398252304	MGP_WTSI_17_43704868	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263026704					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252304	MGP_WTSI_17_43704868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	404 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	199 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	361 bp proximal
Tssr144685	transcription start site region 144685	68 bp upstream
Tssr144686	transcription start site region 144686	177 bp upstream
Tssr144687	transcription start site region 144687	233 bp upstream
Tssr144688	transcription start site region 144688	371 bp upstream
Tssr144689	transcription start site region 144689	528 bp upstream
Tssr144690	transcription start site region 144690	563 bp upstream
Tssr144691	transcription start site region 144691	583 bp upstream
Tssr144692	transcription start site region 144692	639 bp upstream
Tssr144693	transcription start site region 144693	687 bp upstream
Tssr144694	transcription start site region 144694	722 bp upstream
Tssr144695	transcription start site region 144695	770 bp upstream
Tssr144696	transcription start site region 144696	787 bp upstream
Tssr144697	transcription start site region 144697	1477 bp upstream
Tssr148130	transcription start site region 148130	585 bp downstream