rs263031700 SNP Detail

Summary

• ID
  rs263031700
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:78698090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGGGGTC TCTTTCCAGT
  CACTTGGCAG AGCTCTTGTC GGGGAGGGAG TAAGGAGACG GCTCTGGACA CACGAAGCAG
  TTTATGTGCT TAGCATATAC CAGGATATAG CTCGCTTGTG TAAGTTCACT GAATCTGTAT
  CTTTGAAACG TTACAGATGT GACTTATTTA TAGTTTCGAG TATTTTTTTT TTCTTTTTTT
  W
  ACCAAAGCTC TTCTATTTGG AGGAAAAATA GTATGTTGGC TCACTTCTTT TCATTTTCCT
  TTCTCTTGAG CATTGGCTCA TGTCTTATGG CTCCGCCATT CTAGTTTCTT CTGTGAACTC
  CTCCTCCCAG GACCCCTGGC CCTGAACACT CTTGAGAGAG GAATGCACAA ATTCCTTCGA
  GGTTCCATCA CTGGAACATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354575676	MGP_WTSI_2_78707903	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263031700					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575676	MGP_WTSI_2_78707903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78698090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11839	CpG island 11839	595 bp proximal
Rr559887	regulatory region 559887	811 bp proximal
Rr559888	regulatory region 559888	1165 bp proximal
Rr559889	regulatory region 559889	1442 bp proximal
Rr559890	regulatory region 559890	1448 bp proximal
Tssr18521	transcription start site region 18521	979 bp upstream
Tssr18522	transcription start site region 18522	1049 bp upstream
Tssr18523	transcription start site region 18523	1263 bp upstream
Tssr18524	transcription start site region 18524	1374 bp upstream
Tssr18525	transcription start site region 18525	1406 bp upstream
Tssr18526	transcription start site region 18526	1455 bp upstream
Tssr18527	transcription start site region 18527	1552 bp upstream
Tssr18528	transcription start site region 18528	1599 bp upstream
Tssr18529	transcription start site region 18529	1736 bp upstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3	378 bp upstream