rs263032089 SNP Detail

Summary

• ID
  rs263032089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116507684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTGGAC AGCTTAGCTT
  GCTGGAGAAG CACCTGAGGA AGTCACTGAC TTCGGTATCT TCAATCCATC TTGGAAAACC
  AAAGAAAAGT CATGTATCTA TGTGTGTCAA GGGGCTGGGG GACAATCCCA AGGCCTTACA
  CACGCCAATT CTACCTCTGA CCTACACCTG TTAGTATTTT ACTAACTTTG AGCAAGTACT
  W
  AAAAAAAAAA AATCTGGGTT GGAGGTGTAG TTCAGTTGGT AAAGGGCTTG TCCGGGGCGG
  AGTTTGACTC TAGTTCCAGG GAATATGTCC CTTTCTTATG ACCTCCATGG GCACCAGGCA
  CCCACAAGGT ACACATACTT ACATAGCAGA CAAAACATTA ATTTTTAGCA AAAATTCTTC
  AAAGAGACTC TGTCTCCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321277676	CHEV_4_116323092	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263032089					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116507684 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	within coordinates
Cpgi14637	CpG island 14637	600 bp proximal
Rr597944	regulatory region 597944	68 bp proximal
Rr597945	regulatory region 597945	1179 bp proximal
Rr597946	regulatory region 597946	1183 bp proximal
Tssr38538	transcription start site region 38538	638 bp downstream
Tssr38539	transcription start site region 38539	1021 bp upstream
Tssr42908	transcription start site region 42908	within coordinates
Tssr42909	transcription start site region 42909	902 bp downstream
Tssr42910	transcription start site region 42910	932 bp downstream
Tssr42911	transcription start site region 42911	948 bp downstream
Tssr42912	transcription start site region 42912	1054 bp downstream
Tssr42913	transcription start site region 42913	1079 bp downstream
Tssr42914	transcription start site region 42914	1109 bp downstream
Tssr42915	transcription start site region 42915	1157 bp downstream
Tssr42916	transcription start site region 42916	1190 bp downstream