rs263036056 SNP Detail

Summary

• ID
  rs263036056
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91762206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTGGGG CCACAGCCAC
  TGCGTGCGCT CACTCGCTCA CTGCTCGATG CTTCGCTCCC TCCCGCTCCG GCCTGTCCCG
  CTAAGGCCGC TAAGGCCCCT TTTGTCTCCA GAACCGGTCT GAGCCGGTCA CATGGGCCCC
  CGCCCCTCCC CCCATCCCGT GGAAGGACCC GCCCCCTCCC CCCAAACCCG CACCTCCCCA
  G
  ACCCCCCTAG TCCCCGCCTC CACTCCCGCC CCTCGCCGAG CCGGGACTCC CGCGTCTGTG
  CCTCTCACCT CTGATCTCTG GGTCTCTGGT CCTGGAGTTC GGTTTTACCA GTGCGCTTCT
  GGCTCAGGTC CCCTCGTAGC AGGCCCAGCT CTCTATCCCC TCCCCTTCCC CTGGTCTAGG
  CCTGTCTATA CTTTTCCCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821177	MGP_WTSI_2_91772018	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263036056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821177	MGP_WTSI_2_91772018	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91762206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	within coordinates
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	8 bp proximal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	103 bp proximal
Dgkz	diacylglycerol kinase zeta	963 bp downstream
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	within coordinates
Rr560809	regulatory region 560809	1634 bp distal
Rr560810	regulatory region 560810	within coordinates
Rr560811	regulatory region 560811	426 bp proximal
Tssr25211	transcription start site region 25211	1971 bp upstream
Tssr25212	transcription start site region 25212	1957 bp upstream
Tssr25213	transcription start site region 25213	923 bp upstream
Tssr25214	transcription start site region 25214	327 bp upstream
Tssr25215	transcription start site region 25215	191 bp upstream
Tssr25216	transcription start site region 25216	175 bp upstream
Tssr25217	transcription start site region 25217	138 bp upstream
Tssr25218	transcription start site region 25218	89 bp upstream
Tssr25219	transcription start site region 25219	68 bp upstream
Tssr25220	transcription start site region 25220	94 bp downstream
Tssr25221	transcription start site region 25221	133 bp downstream