rs263040338 SNP Detail

Summary

• ID
  rs263040338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112684194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCAAGG CAGGATCTCA
  CTACAAGGCT CAGGCTGAGT TAGCACTTAC CAGGTAAACC AGGCTGGCCT TGAACTCACG
  GAGCTCCACC TGCCTCTACC TCCTGAGTGC TGGGATTAAA GGTGTGTGCT ACCACACCCA
  GCAGCAGTTT ACATCTGTAA TCCCAGCACT GGGGAGATGG AGACAGGAGG ATTCCTGAGA
  Y
  TTACTGGTCA GCAGGACGAC ATGGTGAGCT CCAGGCCAAT GAAAGGCAGA CGCCGTTCCT
  GACAATGACA CCTGCGGTTC CCCGGGAAGG CGGGGGGTGG GGGGGGTGTC TCCACACACA
  TGCCTGCACA CACAGCACAC ATTAAGGAGA GAGATTTGGA AAGGTGCATC ATGGGAGTGT
  CTGTGAGGGC ACTTCCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170459	CHEV_12_113955971	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263040338					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112684194 () rs orientation: forward

Symbol	Name	Function Class
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473580	regulatory region 473580	912 bp distal
Rr473581	regulatory region 473581	332 bp distal
Rr473582	regulatory region 473582	421 bp distal
Tssr115398	transcription start site region 115398	1477 bp upstream