rs263054002 SNP Detail

Summary

• ID
  rs263054002
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132067028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGAAAG CACTTAGCGT
  CTGGCTTGTG CCTGGGAGGG GAACTTTTGC GTTTGTAGGG TTCCGACGGA GGTCAGGGCC
  AAAGGGAGTC CGGGATCCAG AGTCCCCGCG GGGCACGCGT TCTGCCTCAG CACCTGGAAC
  TTGGGAGTGG CTTTCCCAGG GCATCCTTCA CCCCACACAC ACACCAAAAA AATAAATAAA
  W
  AATAAAAAAA TAAAACGCAA GCGCGCCTGC CGAGCGCCCA TCGCCTATGG CAGCTGGGGA
  ATTCTGCCCA AATCTCCAGC GCAAAGGCAG TCGGCCCCTT TAAGGACCGC CCGGCTTACC
  TTTGCTCAGC TTGCCCGGCG CGGTGCCCCT CTCTGGCCGC CGCGGCGGAC TCTGCGCGTG
  TCCCGGTCGT GGCGAGCCGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351465939	MGP_WTSI_1_134035867	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	A	T	T	T	A	A	T	T	T	A	T	T	T	T	T	T	T	T	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263054002					SNP	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	A	T	T	T	A	A	T	T	T	A	T	T	T	T	T	T	T	T	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351465939	MGP_WTSI_1_134035867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132067028 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	within coordinates
Cpgi722	CpG island 722	within coordinates
Gm29629	predicted gene 29629	214 bp upstream
Rr12249	regulatory region 12249	973 bp proximal
Rr28498	regulatory region 28498	within coordinates
Tssr13627	transcription start site region 13627	348 bp downstream
Tssr13628	transcription start site region 13628	358 bp downstream
Tssr13629	transcription start site region 13629	376 bp downstream