rs263056256 SNP Detail

Summary

• ID
  rs263056256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44398131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGACCC AAGACAGCAT
  GCAGTATAGG AGTCCACTAC CTCTCTCCAA AATCAAGCTG CTATGCTAGT GAGAAAGCTT
  TGGGGCCCCA GAAAACGTTG GGTAAGAGAG AGTTGATTTC AGTGTCTCTA ACTGGAGTGG
  AGACATAGTA GGGACCGGGT TTGTCTGTAA TCTTATATGA CTGTAACATG GCACCCACTG
  Y
  AGACTTCAGG AGCTTCCAAC CGAGCACACA CTAAGACTGC ATAATAGGAA AGAAAACTGT
  GGAAAAACAC ACGAGTTGGT ATCAGGAATT ATTAGGACAG TGACTAGCTA GAACGCCTAA
  ATAAATACGA TTTGCTTATA GTATATATTT TAAATGTTTA TTTTTATTTT TAATTATATG
  TCTCTATGGG TGGGTTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552397	MGP_WTSI_19_44484182	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263056256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552397	MGP_WTSI_19_44484182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44398131 () rs orientation: forward

Symbol	Name	Function Class
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	1863 bp distal
Rr363360	regulatory region 363360	730 bp distal
Scd1	stearoyl-Coenzyme A desaturase 1	1983 bp upstream
Tssr156614	transcription start site region 156614	1654 bp downstream
Tssr159521	transcription start site region 159521	1980 bp upstream
Tssr159522	transcription start site region 159522	1870 bp upstream
Tssr159523	transcription start site region 159523	1815 bp upstream
Tssr159524	transcription start site region 159524	1791 bp upstream
Tssr159525	transcription start site region 159525	935 bp upstream
Tssr159526	transcription start site region 159526	916 bp upstream
Tssr159527	transcription start site region 159527	765 bp downstream
Tssr159528	transcription start site region 159528	783 bp downstream