rs263078421 SNP Detail

Summary

• ID
  rs263078421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTCCTTT TCACCCTGTC
  CTCAGGCGTG TGTGTGCAGA CAGAAACTGT GCTGCGCCAG GCCATCGCTG AACGCATCAA
  GCCCGTCCTG ATGATGAACA AGATGGACCG GGCCCTGCTG GAGCTGCAGC TGGAGCCCGA
  GGAGCTCTAC CAGACCTTCC AGCGCATCGT GGAGAACGTC AACGTCATCA TCTCTACCTA
  Y
  GGCGAGGGCG AGAGTGGGCC CATGGGCAAT ATCATGGTGC GAAGCTCTTC TATGGGGGGC
  GGTCAGGGCC ACGCTCCCTG GGAATCTCTG ACCCACCATG ATGACGGAAA TTCTTCACTT
  TGACCTGATG TCTGTTGAAG AAACTCAGTG TCTGAGACTG TGGGCTTGTG GCTGGGCTGG
  CTGCTGACCA TCTTGCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032046	MGP_WTSI_10_80641601	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263078421					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032046	MGP_WTSI_10_80641601	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	680 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	1787 bp upstream
Rr435543	regulatory region 435543	1798 bp distal
Rr435544	regulatory region 435544	1297 bp distal
Rr435545	regulatory region 435545	819 bp proximal
Rr435546	regulatory region 435546	1311 bp proximal
Snord37	small nucleolar RNA, C/D box 37	105 bp upstream
Tssr94696	transcription start site region 94696	1119 bp downstream
Tssr94697	transcription start site region 94697	1019 bp downstream
Tssr94698	transcription start site region 94698	768 bp downstream
Tssr94699	transcription start site region 94699	294 bp upstream
Tssr94700	transcription start site region 94700	478 bp upstream
Tssr94701	transcription start site region 94701	538 bp upstream
Tssr94702	transcription start site region 94702	715 bp upstream
Tssr94703	transcription start site region 94703	778 bp upstream
Tssr94704	transcription start site region 94704	797 bp upstream
Tssr94705	transcription start site region 94705	825 bp upstream
Tssr94706	transcription start site region 94706	1017 bp upstream
Tssr94707	transcription start site region 94707	1067 bp upstream
Tssr94708	transcription start site region 94708	1132 bp upstream
Tssr94709	transcription start site region 94709	1386 bp upstream
Tssr98570	transcription start site region 98570	522 bp downstream
Tssr98571	transcription start site region 98571	890 bp downstream