rs263080089 SNP Detail

Summary

• ID
  rs263080089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATGCAT CGTGCTATGT
  TGGGTTGCAC CTCTTTCTTT GTCATGTAAG TGCAGGCTCA GGACAGACAC TCCTTGGGCA
  GCCTGAAGTT TGCTGATGTT GACAGTGGTA TTTTGAAGCC TCAGAGTGAG CAAAAGTCTT
  GGGCTAGTGG GCATTTACTG TGAATACAGC CACAAAAACA AGGGCTTTCT TAACACAGTG
  Y
  TACTACTTAG ATTAAATTCT GTTTATTTGA AACTGGCAGC ACAACATCTG GGATAGGAGG
  GGAAGGATAA CAGGATAAGT AATTGTAAAC TTGTATCTTA CCGAGAGGAT AGTCAAATTC
  TTGAGAGATG AAGTCAGGGC CCTGAAGAGG CAAAGAGCTA GGAGAGGATA TGAGTGTTCC
  CCAAACAAGA TGGCTTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224101	CHEV_13_5865082	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263080089					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915835 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	995 bp downstream
Tssr118247	transcription start site region 118247	1940 bp downstream
Tssr118248	transcription start site region 118248	1339 bp downstream
Tssr118249	transcription start site region 118249	1134 bp downstream
Tssr118250	transcription start site region 118250	1068 bp downstream
Tssr118251	transcription start site region 118251	1033 bp downstream
Tssr118252	transcription start site region 118252	975 bp downstream
Tssr118253	transcription start site region 118253	574 bp upstream
Tssr118254	transcription start site region 118254	601 bp upstream
Tssr118255	transcription start site region 118255	1731 bp upstream
Tssr118256	transcription start site region 118256	1777 bp upstream
Tssr118257	transcription start site region 118257	1859 bp upstream
Tssr118258	transcription start site region 118258	1901 bp upstream
Tssr121319	transcription start site region 121319	1522 bp upstream
Tssr121320	transcription start site region 121320	1485 bp upstream
Tssr121321	transcription start site region 121321	1474 bp upstream
Tssr121322	transcription start site region 121322	1433 bp upstream