rs263087746 SNP Detail

Summary

• ID
  rs263087746
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87842995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCATAT GGAAAGGCCT
  GGGGCTGTGA CTGGATGCTG GAGTGAACTT TAGCCTGGAG CACATCCTAG GAAGAAAAGA
  ACCGTTAGTC CACACTTCAG CAAAGTCGAC ATTCTTTATT GATTAATTAA TAATCCTTTA
  CCCAATGATA AGCAAAGGAA TGAACAACTA CAAAAACCTT CATTTGCTTA AAAATCTACC
  W
  TGTCCTAGGT GAATACAGTA ATTAATGGCT TTAAATCTAG CAGGTTGAAG TCTGATGCAG
  AAGAATTACT ATAACTTTGA GAACACCCTG AAATAAAAGG TAAATTCTAG GCAATCCTGG
  GGTACAGATT AAGGCCCTTT TTTTTTAAAG ATACACAAAG CAAGAAAGCA TTGTCTAGGG
  TAACATGAAG AAAATAAGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777293	MGP_WTSI_5_88124161	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263087746					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	T	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777293	MGP_WTSI_5_88124161	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87842995 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	1158 bp distal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	1118 bp distal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	961 bp distal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	1273 bp distal
Tssr1529	transcription start site region 1529	575 bp downstream
Tssr46883	transcription start site region 46883	625 bp downstream
Tssr46884	transcription start site region 46884	610 bp downstream
Tssr46885	transcription start site region 46885	589 bp downstream
Tssr46886	transcription start site region 46886	559 bp downstream
Tssr46887	transcription start site region 46887	542 bp downstream
Tssr46888	transcription start site region 46888	436 bp downstream
Tssr46889	transcription start site region 46889	417 bp downstream
Tssr46890	transcription start site region 46890	384 bp downstream
Tssr46891	transcription start site region 46891	371 bp downstream
Tssr46892	transcription start site region 46892	342 bp downstream
Tssr46893	transcription start site region 46893	316 bp downstream
Tssr46894	transcription start site region 46894	271 bp downstream
Tssr46895	transcription start site region 46895	251 bp downstream
Tssr46896	transcription start site region 46896	172 bp downstream
Tssr51618	transcription start site region 51618	596 bp upstream
Tssr51619	transcription start site region 51619	562 bp upstream
Tssr51620	transcription start site region 51620	552 bp upstream
Tssr51621	transcription start site region 51621	533 bp upstream
Tssr51622	transcription start site region 51622	497 bp upstream
Tssr51623	transcription start site region 51623	481 bp upstream
Tssr51624	transcription start site region 51624	464 bp upstream
Tssr51625	transcription start site region 51625	454 bp upstream
Tssr51626	transcription start site region 51626	442 bp upstream
Tssr51627	transcription start site region 51627	416 bp upstream
Tssr51628	transcription start site region 51628	306 bp upstream
Tssr51629	transcription start site region 51629	212 bp upstream
Tssr51630	transcription start site region 51630	164 bp upstream
Tssr51631	transcription start site region 51631	125 bp upstream
Tssr51632	transcription start site region 51632	132 bp downstream
Tssr51633	transcription start site region 51633	917 bp downstream
Tssr51634	transcription start site region 51634	1039 bp downstream