rs263105385 SNP Detail

Summary

• ID
  rs263105385
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:63006561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATTACT TAAGTGTGGA
  AAATGAAAGA AAAAGACTTT GTATAAGTGA CATCATCACT AAAGGTAATA TATATATATA
  TATATATATA TATATATATA TATATATATA TATATATATG AAAGGAGAAT CTTAAATACA
  TTAAGGAAAA TTATATTTGA AAAGTATTTG GGCAATTATC AAGTATTATA AAACACTTCT
  C
  TAAAATAAAT TACATATAAT TGAAAATACA TTTTTAAATG AAAACAAATG TATGAAATAA
  ATATGTATTA GTATACATTT GCATTTATGT ATATGTATGT TCTGTATATG AACACATATC
  TTCACATATA TACACATAGA CTTATATCAC AAAAACTGTG TATTAAATCC ATGATCATCA
  TAAGGTAAGT ACTTCAATAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss368549029	MGP_WTSI_6_62979571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs263105385					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368549029	MGP_WTSI_6_62979571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:63006561 () rs orientation: forward

Symbol	Name	Function Class
Tssr61203	transcription start site region 61203	1437 bp downstream