rs263107262 SNP Detail

Summary

• ID
  rs263107262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118596884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTAGCT TCTGAAGGGA
  GCAGGTGACC TGCCTGTCTT CAGACTGGGT GTTGCCGCCT GGGACCTCAC TCCATCCCTA
  ACCTCCCAGG CTGCAAGGCC CATTCTGAAG TTACACCCAA CCTGCAGCCC CAGTCTTAGC
  AGTGGGAGAT GAACCCCAGT GTGGGACTGA CCCCCTGTCC CCAAGACTCC TTGGGTTTGG
  Y
  CTCTGTTCCT CATGGTGGAG ACAGAGACTC ACAGAGTTCT CCCAGAACCC TGTATTCCAT
  CCCCCACCAA CTGCCACCCT TGGTAGAGGC TGAATTTTGC CTGCATCTGG ACCTGCCCAT
  CACACGCCAT TGGCAGAGCA TCAACTGTGG GCTTCACCTA ACCACATAAG CAAGACTCAT
  ACAGGAAGAG GCAGAAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss355416833	MGP_WTSI_2_118592139	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs263107262					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355416833	MGP_WTSI_2_118592139	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118596884 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	1494 bp downstream
Rr563327	regulatory region 563327	1467 bp distal
Rr563328	regulatory region 563328	1707 bp distal
Rr563329	regulatory region 563329	737 bp distal
Rr563330	regulatory region 563330	88 bp proximal
Rr563331	regulatory region 563331	428 bp proximal