rs263107290 SNP Detail

Summary

• ID
  rs263107290
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:82048689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGAATTGA AAACAGGGTG
  TGGGGTGGAG TGATAAGGTG CCATAGAGAG AAGCTTTGAA ACAGTCAGTC TTAGGGTGAA
  CCTGTGGCAG AGAAGAAAAC CTGTGGAAAG TCCTATTGAA AATAGCTCTT CTGGGTGAGA
  CAGTTGAACG GGCTCCAGCC TTGGGCTATG GAGACTGGAG AAGTCAGTAC TTCATTCCCT
  C
  CCCACCCCCC CTCCCCACCC CTCCCACCCC GAACTGCAGA GGTGCCTTCT GGGTGCCTGG
  GAAAGGAGGA GAGAGCCGGA CAGAGAGAAC TAGGAGGCCA CATTGAGTTG CTCTAGGTTT
  CTTGTGTGCT TTTTCTCTTG GGGGTGGGGT GTAGGCATGT GAATGTGCTG ATAGTGGAAG
  CCAGAGCAAA GCATGTAGCC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394735174	MGP_WTSI_15_81994918	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263107290					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394735174	MGP_WTSI_15_81994918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82048689 () rs orientation: forward

Symbol	Name	Function Class
Rr369971	regulatory region 369971	1695 bp upstream
Rr404532	regulatory region 404532	361 bp downstream
Rr506422	regulatory region 506422	1941 bp distal
Rr506423	regulatory region 506423	759 bp distal
Rr506424	regulatory region 506424	287 bp distal
Rr506425	regulatory region 506425	985 bp proximal
Rr506426	regulatory region 506426	988 bp proximal
Srebf2	sterol regulatory element binding factor 2	Intron