rs263108020 SNP Detail

Summary

• ID
  rs263108020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44510769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAACAA CAGTCACTTA
  CAACAGTAAA ACAAGACGCC CCAGTTCTCT TTCCCATGGC GATCGATCAT TTCTAATAGC
  CGCGAGTCCC AATCAGGGAC CCTTCTCCGC TTGCTTGCCG TTTGTGTAGA AAATTAGCGT
  GCTGAGGTCG GGTACCATCA GCTGGCCGAG GCTAGGGAGT TTCCTGGAGG GTGGCTGAGG
  Y
  AGCGAACAAC CTAGCATGCC TTCATGCATT TCCACCTGCC CACTTACTTG CGAGATTTGG
  AGGCGTAGTC GGAGCCTATT CCCACGCCCT GGCCTTCGAA GTAGTAAATT GCGCACTTTC
  TCTTTAACCC CGTCTCATTT CACCCACGGT CACGTTTCCT CTCCACGCAG CGCGTTTCAA
  GTGGAGTAAA GATTGTAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201301	MGP_WTSI_11_44433444	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263108020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201301	MGP_WTSI_11_44433444	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44510769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2763	CpG island 2763			1313 bp distal
Cpgi2764	CpG island 2764			within coordinates
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175			350 bp distal
Ebf1	early B cell factor 1			Intron
				Noncoding-Transcript-Variant
Rr445654	regulatory region 445654			1226 bp distal
Tssr3469	transcription start site region 3469			875 bp upstream
Tssr3470	transcription start site region 3470			1668 bp upstream
Tssr101041	transcription start site region 101041			1807 bp downstream
Tssr101042	transcription start site region 101042			1738 bp downstream
Tssr101043	transcription start site region 101043			1719 bp downstream
Tssr101044	transcription start site region 101044			1351 bp downstream
Tssr101045	transcription start site region 101045			1208 bp upstream
Tssr101046	transcription start site region 101046			1240 bp upstream
Tssr101047	transcription start site region 101047			1254 bp upstream
Tssr101048	transcription start site region 101048			1269 bp upstream
Tssr107570	transcription start site region 107570			1873 bp upstream