rs263126436 SNP Detail

Summary

• ID
  rs263126436
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCTGGGCT GCAAGGAGGG GACCAGTTGG
  AATGAATGAG CCAGGATCAG AGCCGGGGCG GGGCGAAGAG AAGCGCACAG CCTTGAATGC
  TAGCTTTGGG CGCGCACGGg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  K
  gtgGGGTGAT GATGGCAAGA CCCCAGCCCA AGAGGTCTTT GCCTTTGGAT ATTAGAATTT
  CCCTGGCGAG CTGCAAGGAA GAGTGGAAGA GATTTGGGTG CTTCCCGAGA GGAGGGAAGG
  AAACCTGTAG CTTGGAGCAA GAGTTTCCAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320439902	CHEV_2_102499892	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263126436					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1066 bp distal
Rr561714	regulatory region 561714	923 bp distal
Rr561715	regulatory region 561715	444 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1496 bp downstream
Tssr19099	transcription start site region 19099	1424 bp downstream
Tssr19100	transcription start site region 19100	1155 bp downstream
Tssr19101	transcription start site region 19101	1066 bp downstream
Tssr19102	transcription start site region 19102	1040 bp downstream
Tssr19103	transcription start site region 19103	993 bp downstream
Tssr19104	transcription start site region 19104	971 bp downstream
Tssr19105	transcription start site region 19105	901 bp downstream
Tssr19106	transcription start site region 19106	883 bp downstream
Tssr19107	transcription start site region 19107	863 bp downstream
Tssr19108	transcription start site region 19108	827 bp downstream
Tssr19109	transcription start site region 19109	785 bp downstream
Tssr19110	transcription start site region 19110	503 bp downstream