rs263130117 SNP Detail

Summary

• ID
  rs263130117
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTGACAA GTAACATTTT
  GAGATGAATT CAACACAGTC TGCAGGTGAG GCTGTGCAGA ACAATCAAGA TGGGCAGTGA
  GCTGCAGAGT TTGCAGAATG AGGGCACTCT AAACTCATCA AGTGAGGAGG CCCTTCCCTC
  ACACTCCAGA TGGCTGATAG GTGGCATTAC ATGGTCAGTG TGTGTGCATG TGTGTGTGTG
  T
  GTGCGCGCGC GTGCGCGCGC ACGCGCTCAG ATGCAATCTC CACATTCATA ACCAGATGTC
  CTTGGGTAGG CCTTACACCA GACCACTAAT GGCACCCTCA GTGGACTAGA CATTGTTAGC
  TGTCTCTGGC CATCAGTCCC AAGGTCTCAA CAGCAATTGG ATAAACCAAG CTCAGCCCAG
  ATCATTTATC AGATTGTTCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ
ss363808988	MGP_WTSI_4_155365501	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	SEA/GnJ	SPRET/EiJ
rs263130117					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363808988	MGP_WTSI_4_155365501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075849 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	84 bp proximal
Rr377473	regulatory region 377473	825 bp upstream
Rr606627	regulatory region 606627	1994 bp distal
Rr606628	regulatory region 606628	863 bp distal
Rr606629	regulatory region 606629	30 bp distal
Rr606630	regulatory region 606630	1182 bp proximal
Rr606631	regulatory region 606631	1247 bp proximal
Rr606632	regulatory region 606632	1258 bp proximal
Rr606633	regulatory region 606633	1500 bp proximal
Rr606634	regulatory region 606634	1861 bp proximal
Rr606635	regulatory region 606635	1996 bp proximal
Sdf4	stromal cell derived factor 4	1480 bp upstream
Tssr1404	transcription start site region 1404	1547 bp upstream
Tssr40748	transcription start site region 40748	1008 bp upstream
Tssr40749	transcription start site region 40749	1751 bp upstream
Tssr40750	transcription start site region 40750	1838 bp upstream
Tssr40751	transcription start site region 40751	1913 bp upstream
Tssr44987	transcription start site region 44987	939 bp downstream
Tssr44988	transcription start site region 44988	1212 bp downstream