rs263142729 SNP Detail

Summary

• ID
  rs263142729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCAGAAA AAGCAAAGTC
  AAGGCAGTGG CTCTGATGTA TTCCTCTACC ACCAGGCTCC CGAGGACATG GCCAAACTCA
  TTTCTGCACC AGGGCAAATG GGGAGGGATG CCAGCCTTGC TGGCATCTAG CTGATGAACA
  AAGTAGTCTC TGCTTCAATA CTGATTTGGT CCGCTGAGAC CAGAGGATCA CTCGTCCTGA
  R
  CTCTGCTCCC TTCACGCTGA TGAAGCCCCA CGCTTCTGCT CTGAGGTCCC TCTTAGCTGC
  TGGGCTGAGC CTGCTTTTGG GCTTCAACCC TGGGAGGATA GCAGGTTTTA GTTATGGAAG
  GCTGGGTTCA GTAGTAGCGA ACTTGTCTCT ATGTCAAGGC TGTGGATTGA TCGTCCCTGC
  TGTTACTAGA ATTGCGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104748	CHEV_12_77355274	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263142729					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301061 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	600 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1011 bp upstream
Rr403350	regulatory region 403350	758 bp upstream
Rr468112	regulatory region 468112	521 bp proximal
Rr468113	regulatory region 468113	1440 bp proximal
Tssr113934	transcription start site region 113934	922 bp upstream
Tssr113935	transcription start site region 113935	957 bp upstream
Tssr113936	transcription start site region 113936	1003 bp upstream
Tssr113937	transcription start site region 113937	1045 bp upstream
Tssr113938	transcription start site region 113938	1061 bp upstream
Tssr113939	transcription start site region 113939	1084 bp upstream
Tssr113940	transcription start site region 113940	1166 bp upstream
Tssr113941	transcription start site region 113941	1196 bp upstream
Tssr116711	transcription start site region 116711	759 bp downstream
Tssr116712	transcription start site region 116712	785 bp downstream