rs263145460 SNP Detail

Summary

• ID
  rs263145460
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118569011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGAGTCT ATCCCACCAC TGTCCCCGTC
  TGATGGTTAC CGCATCCTCT CAGTTGAGAT ATATGCTGTG ACAGTGCTTG GGAAAGCCAG
  CCACCTCTTC CCACGGGATG CTGGAACATT GGACAAGAAT CCACAGAGAA GAGCAGAAGA
  Y
  AGCAGAAGAG CTGGGTGGAA CACGTCCTGA CCTCGAAAAG CAAGATTCGG CATGGGCAAC
  CTTACCACTG GGTTTTGGAA ATAACTGAGG GATATGGAAA CAAAACACAA GATATGCAAA
  ATGGCACCTC CCCTCTCTCT GGAAAGCAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321925383	CHEV_6_118542068	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263145460					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118569011 () rs orientation: forward

Symbol	Name	Function Class
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit	mRNA-UTR
Cpgi17905	CpG island 17905	1593 bp proximal
Rr637493	regulatory region 637493	1455 bp proximal
Rr637494	regulatory region 637494	1874 bp proximal