rs263162564 SNP Detail

Summary

• ID
  rs263162564
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172041659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCCA GAAGGTCCCC
  ACAGCTGAAG CCACCTCTGG GTCAGGCCTA GGGCATAAAC AGCTTGTAGC CCAGAACAAA
  GCCAGTTAGC AAATCTAAGC TCTGGGCATC AGGCCCAGAA CATGGCACGG CTGCAAAACA
  ATGGTTAGTG GGAAGGGGAT GGCTGGAAGA GAGACGCTGG GGGCAAAGGT AAGAACTGGA
  W
  ATCAGCAGAG TCATTTACTT TTTCATTCAC TCATTTAGTA AAGCTGACAG CCTGGGCTCG
  AAATAAAATT CCATGCCTCC TGTATGCCAG GCCCTGGGTT CCCTTCCCAG TACAGGAAAG
  GGTTGGGGGC GGGTATAGGT TATGAGGACT GAGTTAGGTA TTGATTAAAC CATGTTGGTA
  TGTTGTGCCC CAGTGAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352401108	MGP_WTSI_1_174144223	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263162564					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352401108	MGP_WTSI_1_174144223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172041659 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	Intron
Gm17224	predicted gene 17224	406 bp downstream
Rr423487	regulatory region 423487	86 bp distal
Tssr15176	transcription start site region 15176	1017 bp upstream
Tssr15177	transcription start site region 15177	963 bp upstream
Tssr15178	transcription start site region 15178	930 bp upstream
Tssr15179	transcription start site region 15179	914 bp upstream
Tssr15180	transcription start site region 15180	694 bp upstream
Tssr15181	transcription start site region 15181	131 bp upstream
Tssr15182	transcription start site region 15182	948 bp downstream
Tssr15183	transcription start site region 15183	1889 bp downstream