rs263166044 SNP Detail

Summary

• ID
  rs263166044
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87055385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGAAG GTCGGGTAGA
  GGTGACTCAG ATCAGAGATC CTCTCCCTTA ACATCTTGTC CCTCCAGGTG GCTCATCGTA
  CCGGCAGCAG GCTGCTGTGC CGGTGAAGTC GGAGACCCAC GGCGGGGAGG ACGTGGCGAT
  ATTCGCGCGT GGCCCGCAGG CGCACTTGCT GCACGGGGTG CAGGAGCAGA ACTACATCGC
  K
  CACGTCATGG CCTTCGCAGG CTGCCTGGAG CCCTACACCG ACTGCGGCTT GGCACCCCCT
  GCAGATGAAA GCCAGACCAC CACGACAACC CGCCAGACCA CCATCACCAC CACCACCACC
  ACCACCACCA CCACAACCAC CCCGGTCCAT AACAGCGCCA GAAGCCTGGG CCCAGCCACC
  GCCCCGCTGG CTCTGGCGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380331	MGP_WTSI_1_89024238	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263166044					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380331	MGP_WTSI_1_89024238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87055385 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	within coordinates
Cpgi518	CpG island 518	within coordinates
Rr17963	regulatory region 17963	585 bp distal
Tssr145	transcription start site region 145	1311 bp downstream
Tssr146	transcription start site region 146	69 bp downstream
Tssr147	transcription start site region 147	277 bp downstream
Tssr148	transcription start site region 148	939 bp upstream
Tssr7783	transcription start site region 7783	1967 bp downstream
Tssr7784	transcription start site region 7784	1725 bp downstream
Tssr7785	transcription start site region 7785	1686 bp downstream
Tssr7786	transcription start site region 7786	1659 bp downstream
Tssr7787	transcription start site region 7787	1330 bp downstream
Tssr7788	transcription start site region 7788	932 bp downstream
Tssr7789	transcription start site region 7789	898 bp downstream
Tssr7790	transcription start site region 7790	845 bp downstream
Tssr7791	transcription start site region 7791	718 bp downstream
Tssr7792	transcription start site region 7792	692 bp downstream
Tssr7793	transcription start site region 7793	681 bp downstream
Tssr7794	transcription start site region 7794	668 bp downstream
Tssr7795	transcription start site region 7795	636 bp downstream
Tssr7796	transcription start site region 7796	613 bp downstream
Tssr7797	transcription start site region 7797	600 bp downstream
Tssr7798	transcription start site region 7798	562 bp downstream
Tssr7799	transcription start site region 7799	325 bp downstream
Tssr7800	transcription start site region 7800	289 bp downstream
Tssr7801	transcription start site region 7801	244 bp downstream
Tssr7802	transcription start site region 7802	122 bp downstream
Tssr7803	transcription start site region 7803	62 bp downstream
Tssr7804	transcription start site region 7804	37 bp downstream
Tssr7805	transcription start site region 7805	31 bp upstream
Tssr7806	transcription start site region 7806	45 bp upstream
Tssr7807	transcription start site region 7807	65 bp upstream
Tssr7808	transcription start site region 7808	170 bp upstream
Tssr7809	transcription start site region 7809	240 bp upstream
Tssr7810	transcription start site region 7810	265 bp upstream
Tssr7811	transcription start site region 7811	294 bp upstream
Tssr7812	transcription start site region 7812	344 bp upstream
Tssr7813	transcription start site region 7813	385 bp upstream
Tssr7814	transcription start site region 7814	415 bp upstream
Tssr7815	transcription start site region 7815	483 bp upstream
Tssr7816	transcription start site region 7816	523 bp upstream
Tssr7817	transcription start site region 7817	535 bp upstream
Tssr7818	transcription start site region 7818	710 bp upstream
Tssr7819	transcription start site region 7819	1026 bp upstream
Tssr12838	transcription start site region 12838	1933 bp upstream
Tssr12839	transcription start site region 12839	1923 bp upstream
Tssr12840	transcription start site region 12840	1914 bp upstream
Tssr12841	transcription start site region 12841	855 bp upstream
Tssr12842	transcription start site region 12842	535 bp upstream
Tssr12843	transcription start site region 12843	272 bp upstream
Tssr12844	transcription start site region 12844	67 bp upstream
Tssr12845	transcription start site region 12845	85 bp downstream
Tssr12846	transcription start site region 12846	146 bp downstream
Tssr12847	transcription start site region 12847	617 bp downstream
Tssr12848	transcription start site region 12848	686 bp downstream
Tssr12849	transcription start site region 12849	705 bp downstream