rs263170880 SNP Detail

Summary

• ID
  rs263170880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23897789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTTGCCT CTCCCTTCCC
  AGCCCTGGTA TTAAAGGCAT GTGTCACCAC GCCTGGCCAT ATATGTTGCT TTCTGTTGCT
  TTCTTTCTTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTTTTTTTC TCCAAAACGA
  GTCTCTCTGT ATAGCCCTGG CTGTCCTGGA ACTCTCTCTG AAGACCAGGC TAGCCTCTAA
  Y
  TCAGAAATCC GCCTGCCTCT GCCTCCCAAC TGCTGGGATT AAAGGCGTGA GCCACCATTG
  CCCGGCTATA TATTGCTTTC TTAAGGGCCT CGGGAAGAGC ACGAGATGAT TCAGTGGGTA
  AGATTGCCTG CTGCCAAGCC TGGCAATCTG AGTTCGATCC CTGGGGCCCA CAGAGTAGAA
  GAAGAGAACA AACTCTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397840225	MGP_WTSI_17_23815782	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263170880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397840225	MGP_WTSI_17_23815782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23897789 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	556 bp upstream
Cpgi8683	CpG island 8683	1187 bp distal
Cpgi8684	CpG island 8684	477 bp proximal
Rr523107	regulatory region 523107	857 bp distal
Rr523108	regulatory region 523108	101 bp proximal
Rr523109	regulatory region 523109	855 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	1366 bp upstream
Tssr142943	transcription start site region 142943	548 bp upstream
Tssr142944	transcription start site region 142944	857 bp upstream
Tssr142945	transcription start site region 142945	922 bp upstream
Tssr146643	transcription start site region 146643	1359 bp upstream
Tssr146644	transcription start site region 146644	1331 bp upstream
Tssr146645	transcription start site region 146645	1615 bp downstream