rs263173621 SNP Detail

Summary

• ID
  rs263173621
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95739510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATCTGG CTGCCATTCC
  ACCACTTTTT AATTTTATTT TTGGAGGTTG TATCAATAAT TACCCTTGTG TCCTAAACAG
  CAAATGTAAG GATTACTGCA TGGCCTTACC TAGTTAAATA TGCCATTCGA ACATAGTGAA
  ATATCTAACT TTGTTGGGTC GTCAGGTCCC TCTCCGACCC AGATCCTAGC TTACGGCTTC
  S
  CTGAGCATCC AGGTTTGAGC AAAAAATACC CGTGGAGTAG GTCACGCACT CGCCTGGGAG
  GGAAAGTGGG CGGGCACGTC CGCTGTCGGC TCCGCCCCTG TCGCCTCTGG GATTTCCCCA
  GGGTTCCAAC CGCAACCGAG AGCGGCTTCC GGGAGGAGAA TTTTGGACCT CGCGGGGCTC
  CGTCGACGCT CCGCCCTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104516	CHEV_9_95757876	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs263173621					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95739510 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	140 bp upstream
Cpgi22158	CpG island 22158	within coordinates
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	within coordinates
Rr401608	regulatory region 401608	1065 bp upstream
Tssr86577	transcription start site region 86577	171 bp upstream
Tssr86578	transcription start site region 86578	237 bp upstream
Tssr86579	transcription start site region 86579	487 bp upstream
Tssr90940	transcription start site region 90940	102 bp downstream
Tssr90941	transcription start site region 90941	407 bp downstream
Tssr90942	transcription start site region 90942	424 bp downstream