rs263187667 SNP Detail

Summary

• ID
  rs263187667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:120631871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAACAA GCTGCTTGCC
  TGCATGACCC AGCCACAATT TCTGGTAATA GAACAGAAAC CCAGGCTAGA CACTCAGGGT
  CAGCAGGCAC AAGGATAGCA GGTATGTGAC TCTTGAGTGT TAATACCTAC ATTTCAAAGC
  CACATTGGAA AGGATATTGC CTCATCTTTG GCTTTCTGTA TTAGGGGTGT CTCTTGCTAT
  Y
  CCCATCATGG ATAACTGAGG TTTTAATGTA CAGTAGTGAC ATCCTAGTAG CAGGCCTGAG
  GGCAATCTGA ACTTCTGCTT AGTATATTTA CTCTTGCAGC TTTCCTTCCT CCTGATTTGT
  AATTCAGGAA GCTGAGAGGA GAGACAGCAA GGCTTCTTGG ATGGATCGAA AAGCCAGGAG
  CTGGGATACC ACCCTCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372947390	MGP_WTSI_7_128176162	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263187667					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372947390	MGP_WTSI_7_128176162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:120631871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19654	CpG island 19654	1386 bp proximal
D7Mit240	DNA segment, Chr 7, Massachusetts Institute of Technology 240	1188 bp distal
Gm9905	predicted gene 9905	604 bp downstream
Gm72635	predicted gene, 72635	within coordinates
Mettl9	methyltransferase like 9	1797 bp upstream
Rr166622	regulatory region 166622	1129 bp proximal
Rr168961	regulatory region 168961	130 bp proximal
Rr400600	regulatory region 400600	1737 bp upstream
Tssr68809	transcription start site region 68809	128 bp downstream
Tssr68810	transcription start site region 68810	107 bp upstream
Tssr68811	transcription start site region 68811	128 bp upstream
Tssr68812	transcription start site region 68812	143 bp upstream
Tssr68813	transcription start site region 68813	1768 bp upstream
Tssr68814	transcription start site region 68814	1872 bp upstream
Tssr68815	transcription start site region 68815	1894 bp upstream
Tssr68816	transcription start site region 68816	1933 bp upstream
Tssr74531	transcription start site region 74531	1775 bp downstream