rs263189896 SNP Detail

Summary

• ID
  rs263189896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGACC TGGCCACCTT
  CGGAGTCTGC AGCACTGACT CCCAGGCTAC CCTGCCTGCC CTGCAGCGCC TTGGGGCCTG
  GCTAGGGGAG ACTGGAGAAC AGCAGTTGCT AGTCCTACAT CTGGCTGAAG GTACGTGATG
  GACTCTGTCT CAGCGCCCAT GATGCCTTGG GACTGAGTGA GTTAGGGCAG AAGCTGGGGG
  R
  GGGGGGTTTG GGGGAGGGGG CCTCGCTGGA TTGCTAGGCA GAACCTTATA CACCCTTTCA
  GGAACTGTAG TGGGCAAGAT GGCAGGACAC ACCCCAATGA TCACACCTTC CAGACAGATG
  ACAGCAGAGC TGCTGTGTCC TTACAAGCAA GGTCTCCACA CCTTGGATCA GGGTCCCTCA
  GGCCTACATG GCCCCAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss381025296	MGP_WTSI_10_80268466	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BR/cdJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs263189896					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025296	MGP_WTSI_10_80268466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641555 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	657 bp proximal
Rr366747	regulatory region 366747	439 bp downstream
Rr435397	regulatory region 435397	1053 bp distal
Rr435398	regulatory region 435398	340 bp proximal
Rr435399	regulatory region 435399	1377 bp proximal
Sf3a2	splicing factor 3a, subunit 2	799 bp downstream
Tssr94618	transcription start site region 94618	1658 bp downstream
Tssr94619	transcription start site region 94619	1631 bp downstream
Tssr94620	transcription start site region 94620	1603 bp downstream
Tssr94621	transcription start site region 94621	1571 bp downstream
Tssr94622	transcription start site region 94622	1494 bp downstream
Tssr94623	transcription start site region 94623	981 bp downstream
Tssr94624	transcription start site region 94624	472 bp downstream
Tssr94625	transcription start site region 94625	407 bp upstream
Tssr94626	transcription start site region 94626	678 bp upstream
Tssr94627	transcription start site region 94627	1109 bp upstream
Tssr94628	transcription start site region 94628	1954 bp upstream
Tssr98515	transcription start site region 98515	1650 bp upstream
Tssr98516	transcription start site region 98516	1912 bp downstream