rs263194482 SNP Detail

Summary

• ID
  rs263194482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56282701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCCTCC AGTCTTCCAG
  AGTCACCTTA AAAATAACAC CTCCCCAGCA CAAAGCAAAC AAAAGGCGAG CGAGAGCCGC
  GGGGCTTCCA TAGCTCCTCT CCAGCCCGCC CCGGCCTGGG ATTCCGTCCG CGAGTGGTCC
  CCAGGCCTCG CCTGCTCAGG CCTCGCGGCG GGTGCCCCAC CAGCCGGCCT CACAACGGCC
  Y
  GTGGCTCGCG CCCCACTTTA TTGTGCCCGG GAGGGCACGC GCGGGCCGGC GGCGCACGAG
  CAAGTAAACT CTGAGCACAG CAGCTCCGGG CCCGGGCGGA ACGGCTGGTC ACGGCCTCCG
  GGCCTCGGTG CCCTCGGGCC CACGCCATCC CTGGCTCTCC CTCCCGGGCA GAGGGGGAGA
  CCCGATCAGC CCCTTGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388701992	MGP_WTSI_13_56236249	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263194482					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388701992	MGP_WTSI_13_56236249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56282701 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	within coordinates
Macroh2a1	macroH2A.1 histone	within coordinates
Tssr4083	transcription start site region 4083	1539 bp downstream
Tssr122739	transcription start site region 122739	517 bp downstream
Tssr122740	transcription start site region 122740	539 bp downstream
Tssr122741	transcription start site region 122741	584 bp downstream
Tssr122742	transcription start site region 122742	630 bp downstream
Tssr122743	transcription start site region 122743	741 bp downstream
Tssr122744	transcription start site region 122744	768 bp downstream
Tssr122745	transcription start site region 122745	788 bp downstream
Tssr122746	transcription start site region 122746	896 bp downstream
Tssr122747	transcription start site region 122747	949 bp downstream
Tssr122748	transcription start site region 122748	1012 bp downstream
Tssr122749	transcription start site region 122749	1060 bp downstream
Tssr122750	transcription start site region 122750	1194 bp downstream