About   Help   FAQ
rs263201199 SNP Detail
Summary
  • ID
    rs263201199
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:142206243 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTGACTCC TCCTGATTCT
TCCACCTAAA ACCTCTCTGG GACCACTTCC TACCCATAGC TCCCCCCACC CAGCCCCCAC
TGCCCCCCAC CCACCCCTCC AACCGCCAGA CTTCCCACAC TCCCCACATC AGTGTGAGTC
TCCTGGGGAG CCCCTAAAAA GCGGGGGCTC CCCAGGAGAC TGACAAAGAT GGCCCATAGG
Y
GTGCTCAGGG TAGGGGTTGT CCCCCAGATC TTTCCTCCCA GGAGCACAAC TAGGGGTCAG
GTTACTTGGG CAGCATGTAT CACTTGGCAG TGCCATCTCC TTATCTGGCC AAACTTATTC
TACACTGGCT AGTCATTGGT CCTCATGGCG GGGGTGGTTG GGGAGCACCG GGCTCACCAT
GTGGACAGGT GCTTAGATGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss373454548 MGP_WTSI_7_149838411 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T T T T T C T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263201199 SNP T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T C T T T T T T C T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss373454548 MGP_WTSI_7_149838411 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:142206243 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi19966 CpG island 19966 1779 bp proximal
D7Mit46 DNA segment, Chr 7, Massachusetts Institute of Technology 46 407 bp proximal
Gm49394 predicted gene, 49394 within coordinates
Igf2 insulin-like growth factor 2 within coordinates
Rr167001 regulatory region 167001 1157 bp proximal
Tssr2462 transcription start site region 2462 540 bp upstream
Tssr2463 transcription start site region 2463 1338 bp downstream
Tssr70229 transcription start site region 70229 438 bp upstream
Tssr70230 transcription start site region 70230 570 bp upstream
Tssr70231 transcription start site region 70231 1047 bp upstream
Tssr70232 transcription start site region 70232 1083 bp upstream
Tssr70233 transcription start site region 70233 1133 bp upstream
Tssr70234 transcription start site region 70234 1159 bp upstream
Tssr70235 transcription start site region 70235 1195 bp upstream
Tssr70236 transcription start site region 70236 1227 bp upstream
Tssr70237 transcription start site region 70237 1323 bp upstream
Tssr70238 transcription start site region 70238 1342 bp upstream
Tssr70239 transcription start site region 70239 1486 bp upstream
Tssr70240 transcription start site region 70240 1807 bp upstream
Tssr75846 transcription start site region 75846 1694 bp upstream
Tssr75847 transcription start site region 75847 1415 bp upstream
Tssr75848 transcription start site region 75848 1381 bp upstream
Tssr75849 transcription start site region 75849 1161 bp upstream
Tssr75850 transcription start site region 75850 1115 bp upstream
Tssr75851 transcription start site region 75851 1102 bp upstream
Tssr75852 transcription start site region 75852 912 bp upstream
Tssr75853 transcription start site region 75853 871 bp upstream
Tssr75854 transcription start site region 75854 464 bp upstream
Tssr75855 transcription start site region 75855 280 bp upstream
Tssr75856 transcription start site region 75856 241 bp upstream
Tssr75857 transcription start site region 75857 226 bp upstream
Tssr75858 transcription start site region 75858 188 bp upstream
Tssr75859 transcription start site region 75859 132 bp upstream
Tssr75860 transcription start site region 75860 77 bp upstream
Tssr75861 transcription start site region 75861 45 bp upstream
Tssr75862 transcription start site region 75862 486 bp downstream
Tssr75863 transcription start site region 75863 505 bp downstream
Tssr75864 transcription start site region 75864 543 bp downstream
Tssr75865 transcription start site region 75865 566 bp downstream
Tssr75866 transcription start site region 75866 621 bp downstream
Tssr75867 transcription start site region 75867 664 bp downstream
Tssr75868 transcription start site region 75868 687 bp downstream
Tssr75869 transcription start site region 75869 697 bp downstream
Tssr75870 transcription start site region 75870 718 bp downstream
Tssr75871 transcription start site region 75871 759 bp downstream
Tssr75872 transcription start site region 75872 1160 bp downstream
Tssr75873 transcription start site region 75873 1182 bp downstream
Tssr75874 transcription start site region 75874 1391 bp downstream
Tssr75875 transcription start site region 75875 1428 bp downstream
Tssr75876 transcription start site region 75876 1460 bp downstream
Tssr75877 transcription start site region 75877 1536 bp downstream
Tssr75878 transcription start site region 75878 1812 bp downstream
Tssr75879 transcription start site region 75879 1834 bp downstream
Tssr75880 transcription start site region 75880 1884 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory