rs263204273 SNP Detail

Summary

• ID
  rs263204273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90017582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTTCTCG GTTTCCGCGG
  CGACTCGGCC GACGTCACAG TTAGAAGACA ATAGCGACTT TCCCCGCTCA GGCTCCTCGG
  GAACTTTCTC AGTCCGCACG CTCCAGGAGC CGGAGCTACC CTCCGCCCCG CCCCCAGCGT
  GCCCCGCGGC CAGGGAGCTC CACGAAGGGC GGGCGGAGGC CGCGGGTAGC GATTGGTTCC
  R
  TGCCAAGGTG GGCGTGGTCA GACTCAGGCC TATAAAAGCT CCGTGGCGCC AGGGCCTCGT
  TTTTTTGCGC GGTCCTTTCC TGCGGCGCCT TCCGTCCGTC GGCTTCTCGT CTTGCTCTCT
  CTGGTCCCTC CGGAGGAGGC CGCCGCGCGT CTCCCGGGGA AGCATGGCGA TGAAAGCGGT
  GTGCGTGCTG AAGGGCGACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397289518	MGP_WTSI_16_90220939	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263204273					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397289518	MGP_WTSI_16_90220939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90017582 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	within coordinates
Rr519072	regulatory region 519072	within coordinates
Rr519073	regulatory region 519073	71 bp proximal
Rr519074	regulatory region 519074	79 bp proximal
Sod1	superoxide dismutase 1, soluble	68 bp upstream
Tssr139276	transcription start site region 139276	1008 bp downstream
Tssr139277	transcription start site region 139277	157 bp downstream
Tssr139278	transcription start site region 139278	105 bp downstream
Tssr139279	transcription start site region 139279	84 bp downstream
Tssr139280	transcription start site region 139280	62 bp downstream
Tssr139281	transcription start site region 139281	53 bp downstream
Tssr139282	transcription start site region 139282	14 bp upstream
Tssr139283	transcription start site region 139283	53 bp upstream