rs263208307 SNP Detail

Summary

• ID
  rs263208307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAACTG ACCTCATTTC
  TACCTCAAGT TCTTCCCCTG CCTTCTTTTT CCTCTCAAAT CTCAGAGAGT TGATTAGATG
  GGAGACACCA AGGAAAATTC TATTGGTATT TTCCTCTCTC TGTCTCTTTC TTGTCCTCCC
  CACCCCCAGA CCTCTGCTCC ATCTTCTATG TCTCTCTGTG GAAGTCTCTG CCCCCACCCT
  Y
  CACTTCCTCC TCCTCTGTCA TCTCTCATGT TAGTTTCTCT CTGATCTGTC AGCCTGGCAT
  CTGAGGGAGG CTTTCAAAAT GCAGTTCAAA AAAAAAAATG CAGATGGGAA AAAAAGGTCT
  GGGCAGGCCA GTGGGTTACA GATGGATCTG GCAGGTTTAT GTGGTGTGGT GTGAGACAGT
  TACTTTCTGC GGGTTGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087445	MGP_WTSI_1_72907522	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs263208307					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087445	MGP_WTSI_1_72907522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	1417 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	908 bp distal
Rr34509	regulatory region 34509	894 bp proximal
Tssr7342	transcription start site region 7342	1416 bp upstream
Tssr12188	transcription start site region 12188	1874 bp upstream
Tssr12189	transcription start site region 12189	1135 bp upstream
Tssr12190	transcription start site region 12190	639 bp upstream
Tssr12191	transcription start site region 12191	80 bp downstream
Tssr12192	transcription start site region 12192	548 bp downstream
Tssr12193	transcription start site region 12193	713 bp downstream
Tssr12194	transcription start site region 12194	893 bp downstream
Tssr12195	transcription start site region 12195	1253 bp downstream
Tssr12196	transcription start site region 12196	1347 bp downstream
Tssr12197	transcription start site region 12197	1365 bp downstream
Tssr12198	transcription start site region 12198	1381 bp downstream